Showing 206 open source projects for "cite"

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  • 1
    igafem

    igafem

    Open source 3D Matlab Isogeometric Analysis Code

    ...The work is funded under the FP7 Initial Training Network Funding under grant number 289361 'Integrating Numerical Simulation and Geometric Design Technology.' If you use this code or inspired by it please cite the following reference in your work: VP Nguyen, C Anitescu, S Bordas, T Rabczuk. "Isogeometric analysis: an overview and computer implementation aspects". Mathematics and Computers in Simulation, (2015), pp. 89-116, Vol 117.
    Downloads: 1 This Week
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  • 2

    Cloud2Sim

    Adaptive and Distributed Architecture for Cloud/MapReduce Simulations

    An Adaptive and Distributed Architecture for Cloud and MapReduce Algorithms and Simulations. Please cite the below papers, if you used this project or referred to this in your work. Kathiravelu, P. & L. Veiga (2014). An Adaptive Distributed Simulator for Cloud and MapReduce Algorithms and Architectures. In IEEE/ACM 7th International Conference on Utility and Cloud Computing (UCC 2014), London, UK. pp. 79 – 88. IEEE Computer Society.
    Downloads: 2 This Week
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  • 3
    Mr.FSM

    Mr.FSM

    Large-Scale Frequent Subgraph Mining in MapReduce

    ...Large-Scale Frequent Subgraph Mining in MapReduce. In Proceedings of the 30th IEEE International Conference on Data Engineering (ICDE), pages 844-855, 2014. Please cite the paper if you choose to use the program. If having any problems, please report to {wlin1 at ntu dot edu dot sg}.
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  • 4

    LWPR

    Locally Weighted Projection Regression (LWPR)

    ...At its core, it uses locally linear models, spanned by a small number of univariate regressions in selected directions in input space. A locally weighted variant of Partial Least Squares (PLS) is employed for doing the dimensionality reduction. Please cite: [1] Sethu Vijayakumar, Aaron D'Souza and Stefan Schaal, Incremental Online Learning in High Dimensions, Neural Computation, vol. 17, no. 12, pp. 2602-2634 (2005). [2] Stefan Klanke, Sethu Vijayakumar and Stefan Schaal, A Library for Locally Weighted Projection Regression, Journal of Machine Learning Research (JMLR), vol. 9, pp. 623--626 (2008). ...
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  • 5
    ArabicDiacritizer

    ArabicDiacritizer

    An automatic restoration of Arabic diacritic marks

    ...The algorithm is described in detail in: Ilyes Rebai, and Yassine BenAyed 'Text-to-speech synthesis system with Arabic diacritic recognition system', Computer Speech & Language, 2015. We appreciate it very much if you can cite our related work. ************** Installation *************** - Extract the archive "ArabicDiacritizer Setup.rar". - Install the application using "Setup.exe". - Put an Arabic text in the Text Box. - Start the diacritization process. If the following problem occured: <Access to the path '..\ArabicDiacritizer v1.0\text.data' is denied> - Access to the path "Program Files\ArabicDiacritizer\ArabicDiacritizer v1.0\", - Right click on "ArabicDiacritizer" - Choose "Run as administrator" For further information, please contact: rebai_ily
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  • 6
    Functional Mechanism

    Functional Mechanism

    Regression Analysis under Differential Privacy

    Functional Mechanism is a differentially private method designed for a large class of optimization-based analyses. The main idea is to enforce epsilon-differential privacy by perturbing the objective function of the optimization problem, rather than its results. Please cite the following paper if you choose to use this code: J. Zhang, Z. Zhang, X. Xiao, Y. Yang, and M. Winslett. Functional Mechanism: Regression Analysis under Differential Privacy. PVLDB 5(11):1364-1375, 2012.
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  • 7

    IPred

    Integrate ab initio and evidence based gene predictions

    ...IPred is written in Python and can be used from the command line as well as with the help of a GUI (java 7 based). It is available for linux, windows and mac. To install IPred, simply download the package and unpack it with >unzip IPred.zip. If you use IPred, please cite the following manuscript: in submission.
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  • 8

    EBMSummariserCorpus

    A corpus for evidence-based medicine query-based summarisation

    This corpus has been sourced from the Clinical Inquiries section of the Journal of Family Practice (http://www.jfponline.com/) with kind permission of the publishers to distribute to the research community. For further details and to cite this work, see: D. Mollá, M.E. Santiago-Martinez A. Sarker, C. Paris. A Corpus for Research in Text Processing for Evidence Based Medicine (2016). Language Resources and Evaluation, 50(4):705-727. DOI 10.1007/s10579-015-9327-2 http://link.springer.com/article/10.1007/s10579-015-9327-2 D. Mollá, M.E. Santiago-Martinez (2011). ...
    Downloads: 1 This Week
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  • 9
    “Arabic Wikipedia into Named Entity Taxonomy” is a dataset consists of 4000 of Arabic Wikipedia articles that classified into coarse-grained NE taxonomy. This dataset can be used in document classification tasks in relation to NER. To use this corpus, please cite the following publication: F. Alotaibi and M. Lee, "Mapping Arabic Wikipedia into the Named Entities Taxonomy", In Proceedings of COLING 2012: Posters, p43-52, IIT, Mumbai, India, December 8-15. 2012. Author URL: http://www.cs.bham.ac.uk/~fsa081/index.html http://fsalotaibi.kau.edu.sa Email: fsalotaibi {AT} kau.edu.sa fsa081 {AT} cs.bham.ac.uk
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  • 10

    Arabic Named Entity Gazetteer

    Arabic Named Entity Gazetteer

    ...Each line has an Arabic entity (UTF-8 encoding). This release of WikiFANE_Gazet consists of 68343 entities categorised into 50 classes. To use this corpus, please cite the following publication: F. Alotaibi and M. Lee, "Automatically Developing a Fine-grained Arabic Named Entity Corpus and Gazetteer by utilizing Wikipedia", In Proceedings of IJCNLP, p392-400. Nagoya, Japan, October, 2013. Author URL: http://www.cs.bham.ac.uk/~fsa081/index.html http://fsalotaibi.kau.edu.sa Email: fsalotaibi {AT} kau.edu.sa fsa081 {AT} cs.bham.ac.uk
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  • 11

    Persica-A new Persian corpus for NLP

    This project presents a new corpus for NEWS text analysis in Persian

    ...NEWS analysis includes NEWS classification, topic discovery and classification, category classification and many more procedures. Dealing with NEWS has special requirements and first of all a valid and reliable corpus to perform the experiments on them. Please use this reference to cite us: @inproceedings{eghbalzadeh2012persica, title={Persica: A Persian corpus for multi-purpose text mining and Natural language processing}, author={Eghbalzadeh, Hamid and Hosseini, Behrooz and Khadivi, Shahram and Khodabakhsh, Ali}, booktitle={Telecommunications (IST), 2012 Sixth International Symposium on}, pages={1207--1214}, year={2012}, organization={IEEE} }
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  • 12
    piv_clustering

    piv_clustering

    structural clustering of atomic trajectories based on PIV

    ...The output is a partitioning of the trajectory into a few structural clusters (i.e., sets of frames), allowing for simpler analysis and visualization. Please read and cite Gallet & Pietrucci, J. Chem. Phys. 139, 074101 (2013)
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  • 13

    grasp-release

    GRASP: Guided Reference-based Assembly of Short Peptides

    ...GRASP assembles the fragmented short-peptides, which are called from the NGS reads, and aligns the assembled contigs to the query reference protein. GRASP achieves much higher sensitivity than BLASTP for gene annotation purpose. If you found GRASP useful for your projects, please cite: Zhong, C., Yang, Y., and Yooseph, S. GRASP: Guided Reference-based Assembly for Short Peptides, Manuscript in preparation
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  • 14

    Lep-MAP

    fast and accurate linkage map construction for large SNP datasets

    ...Note there is a new version, Lep-MAP2 available in https://sourceforge.net/projects/lepmap2/ Also note a bug in Lep-MAP: genotype alleles should be given in numerical order like "1 2", not as "2 1". If you use Lep-MAP, please cite Lep-MAP: fast and accurate linkage map construction for large SNP datasets Pasi Rastas; Lars Paulin; Ilkka Hanski; Rainer Lehtonen; Petri Auvinen Bioinformatics 2013; doi: 10.1093/bioinformatics/btt563
    Downloads: 0 This Week
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  • 15

    vbTPM

    Variational Bayes for tethered particle motion

    ...http://dx.doi.org/10.1093/nar/gku563 2014-06-11: manuscript accepted for publication in Nucleic Acids Research. Preprint: http://arxiv.org/abs/1402.0894 If you use this code, please cite our work: Stephanie Johnson, Jan-Willem van de Meent, Rob Phillips, Chris H. Wiggins, and Martin Lindén Multiple LacI-mediated loops revealed by Bayesian statistics and tethered particle motion. Nucleic Acids Research (2014), doi: 10.1093/nar/gku563
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  • 16
    Kernel Adaptive Filtering Toolbox

    Kernel Adaptive Filtering Toolbox

    a Matlab benchmarking toolbox for kernel adaptive filtering

    ...This toolbox includes algorithms, demos, and tools to compare their performance. See the included README file for a list of included algorithms and more details. If you use this toolbox in your research please cite: @inproceedings{vanvaerenbergh2013comparative, author = {Van Vaerenbergh, Steven and Santamar{\'i}a, Ignacio}, booktitle = {2013 IEEE Digital Signal Processing (DSP) Workshop and IEEE Signal Processing Education (SPE)}, title = {A Comparative Study of Kernel Adaptive Filtering Algorithms}, year = {2013}, note = {Software available at \url{https://github.com/steven2358/kafbox/}} }
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  • 17
    ...This blacklist can be used to filter potential false positives from variant or RNA editing calls. This software is described in "BlackOPs: Increasing Confidence in Variant Detection through Mappability Filtering" by CR Cabanski et al. Please cite this article if you use our software or available blacklists in your own analysis.
    Downloads: 0 This Week
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  • 18
    MIST

    MIST

    A MATLAB toolbox to simulate optical systems

    ...This tool is being developed mainly for simulation of large scale interferometers with resonant cavities used for the detection of gravitational waves. Subscribe to the mailing list for updates and news. If you use MIST in your own simulation work, please cite is as G. Vajente, "Fast modal simulation of paraxial optical systems: the MIST open source toolbox" Classical and Quantum Gravity 30, 075014 (2013)
    Downloads: 3 This Week
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  • 19

    Genome Microsatellite Analyzing Tool

    GMATO : Microsatellite Analyzing Tool for Huge Genome at any size

    ...GMATo also has easy and graphical user interface scripted in Java and command line interface in Perl, either running in Windows, Linux and Mac etc. platforms with easily customized parameters control for biologists and bio-informatician. Software GMATo is a better tool for SSR characterization in a huge genome cite this paper: Wang X. et al , Bioinformation [2013, 9(10):541-544]
    Downloads: 1 This Week
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  • 20
    IRToolkit

    IRToolkit

    IRToolkit

    ...Furthermore, it offers a capability to compare the performance (in terms of precision, recall, index size, search response time and so on) between several open source IR applications. If you use the IRToolkit please cite the following work: https://sites.google.com/site/dinhbaduy/bibtex#Dinh-Phdthesis-2012
    Downloads: 1 This Week
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  • 21
    GraFIX fixations coder
    GraFIX is a software and a method to detect fixations in low and high quality data, consisting of a two-step process in which eye-tracking data is initially parsed by using adaptive velocity-based algorithms, before it is hand-coded using the graphical interface, allowing accurate and rapid adjustments of the algorithms' outcome. GraFIX is released under the GPLv3 public license (http://www.gnu.org/licenses/). Please cite as: Saez de Urabain, I.R., Johnson, M.H., Smith, T.J., (2014) GraFIX: A semiautomatic approach for parsing low- and high-quality eye-tracking data. Behavior Research Methods. doi:10.3758/s13428-014-0456-0 Download the paper at: http://link.springer.com/article/10.3758/s13428-014-0456-0
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  • 22

    Graphlet kernel framework

    Calculates similarity between neighborhoods of two vertices in a graph

    ...The graphlet kernel framework can be used for vertex (node) classification in graphs, kernel-based clustering, or community detection. If you use this framework, please cite the following paper: Lugo-Martinez J, Radivojac P. Generalized graphlet kernels for probabilistic inference in sparse graphs. Network Science (2014) 2(2): 254-276.
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  • 23
    ijblob
    ...Computer Vision and Image Understanding, 93(2), 206–220. doi:10.1016/j.cviu.2003.09.002 The ImageJ *Shape Filter Plugin* (see downloads) uses this library for flitering the blobs by its shape. If you are using IJBlob in a scientific publication, please cite: Wagner, T and Lipinski, H 2013. IJBlob: An ImageJ Library for Connected Component Analysis and Shape Analysis. Journal of Open Research Software 1(1):e6, DOI: http://dx.doi.org/10.5334/jors.ae
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  • 24
    gannu

    gannu

    Java API and tools for performing NLP and other AI tasks

    ...Gannu uses the following projects: Weka, JExcel API, Stanford POS Tagger and WordNet. Please cite them when using Gannu.
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  • 25
    texiteasy

    texiteasy

    Simple and Powerful Latex Editor

    Downloads: 3 This Week
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