Search Results for "read" - Page 67
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Showing 3586 open source projects for "read"
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MIPVAR
MIP VARiant calling tool
A Java application to analyse Molecular Inversion Probe sequencing data within short time. Running the pipeline requires previous installation of three general tools: BWA, GATK and Bedtools. Input: For running the pipeline you need to specify 3 arguments. An example of the command is given below. The two input files are essential to specify the sample and run configuration. The environment argument should always be set to EMPTY. A brief description of other required files can be found... -
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read chung is a small txt reader with multilingual tts text to speech voices from responsivevoice and yandextranslate and animated 3D face avatar written in html5 , javascript and uses jsc3D .
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LogHut
Static blog engine written in Java.
It creates html file when you write a post. So when people read your post your blog is basically a static web site. This makes you able to run personal blog even on raspberry pi. You can also customize your blog using freemarker templates. Please read descriptions at the link below for more details. -
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hybrid storage
A Hybrid Drive (SSD + HDD) for Linux
HYBRID is a tiered cache module running in Linux. In other words, It is a hybrid storage that consists of SSD and HDD. It makes SSD a fully durable and persistent read/write cache. It guarantees persistency and consistency of dirty data even at a crash or a power failure using general SSDs. It quickly recovers the flash cache without any data loss. It is implemented as a Linux kernel module. (tested under Linux kernel 2.6.35 and 3.19.8) The evaluation was performed with real desktop workloads, showed it outperforms another flash cache by 50%. ... -
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EasyNcid
Auslesen der Anrufliste der EasyBox 802 (Arcor Vodafon)
NCID (Network Caller ID) for Vodafone EasyBox 802. The Easybox offers a feature to read out its Caller List. This App displays the list and starts a background service, that pops up incoming calls on the display while the App is inactive. A simple phone book is included to give a Name to the various numbers. -
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This paper represent a development and deployment and/or Implementation of Optical Character Recognition (OCR) to translate images of typewritten or handwritten characters into electronically editable format by preserving font properties. OCR can do this by applying pattern matching algorithm. The Recognized characters are stored in editable format. Thus OCR make the computer read the printed documents discarding noise. Keywords- Optical Character Recognition, Image convert to character, Image cropping.
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BioGB
Highly portable Gameboy Color emulator
BioGB was designed with the following properties: 1. It most be as portable as posible. 2. The code most be easy to read. -
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JavaCá&Lá
A Java Distributed Shared Memory Middleware
...Our middleware APIs is simple, intuitive and designed for young and senior programmers who don’t have high performance programming skills. Using our middleware, different programmers can develop applications in a collaborative way, i.e., one programmer application can read and write global variables from another application, developed by another programmer, in another machine, without explicit references. Existing Java applications can be executed by JCL. Low refactorings to insert distributed JCL maps in your existing code. Portable JCL code for multicore and multicomputer architectures. -
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superGetOpt (a getopt replacement)
A simple, elegant way to handle command line arguments in C/C++.
...A Simple Example: ================= int main( int argc, char *argv[] ) { int n, argPos; float yourFloat; int yourInt; char *yourString; n = superGetOpt( argc, argv, &argPos, "-YourFlag %f%s%d", &yourFloat, yourString, &yourInt, "Help Message", NULL ); return(n); } It's that easy. No header files to create, no argument order to concern yourself with. Please read the testSuperGetOpt.c example and you'll fully understand. -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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PLEASE NOTE: The Open Screenplay Format SDK can now be found at https://github.com/OpenScreenplayFormat/osf-sdk. This repository is no longer maintained. ------------------------------------------------------------------------------ An Open Screenplay Format for screenwriting software.
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LORE
Another RAID Driver for Linux
LORE (Layer Of Raid Engine) is a software RAID driver for Linux like MD. LORE delivers better performance than MD in various worklaods. -
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OntoInterface
A java-based Web-server as an interface to the Jena
A java-based Web-server as an interface to the Jena library to query RDF ontologies with Sparql. Alas: Yet another SPARQL interface library. Provided with a GUI interface for testing and administration. RDF-content read from file-system. -
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Scala Exercises
The easy way to learn Scala
Scala Exercises is an open source platform for learning Scala through interactive exercises and tutorials. It provides a hands-on learning environment where users can read theory and immediately code (in the browser) and see results. The content covers Scala language features, functional programming libraries (cats, scalaz, etc.), and fp-style patterns. It is modular, so additional modules or “sections” can be added for new topics or libraries. The aim is to reduce the friction in learning Scala by integrating documentation, examples, and live code execution in a unified environment. ... -
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NORD POS
Enhanced mobile version of POS
NORD POS Web Application Platform was based on a fork of Openbravo POS. NORD POS Web Application Platform includes Jetty 9 and Apache Derby embedded servers, device drivers, Pentaho Data Integration engine, new Java Swing interface and more the other changes as opposed to Openbravo POS. NORD POS presents a new interface, full cross-platform and support of the many mobile web applications. All in one platform based on Stripes JavaEE Framework. The cashiers and storekeepers have access to... -
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Limpopo is a library for MAGE-TAB parsing and validation that will read mage-tab files into an object model, and includes a plugin mechanism that is open and extensible for writing MAGE-TAB data to other data resources such as a database.
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orbkit (Moved to Github)
A Modular Python Toolbox for Cross-Platform Post-Processing of Quantum
PLEASE NOTE ORBKIT HAS BEEN MOVED TO https://github.com/orbkit/orbkit orbkit is a parallel Python program package for post-processing wave function data extracted from output files of MOLPRO (Molden File Format), TURBOMOLE (AOMix file format), GAMESS-US, PROAIMS/AIMPAC (wfn/wfx file format), and Gaussian (Output File and Formatted Checkpoint File) output files. Futhermore, an interface to cclib, a parser for quantum chemical logfiles, is provided. If you use orbkit in your work,... -
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erne
ERNE - Extended Randomized Numerical alignEr
We present ERNE (Extended Randomized Numerical alignEr), a short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads. ERNE comprises ERNE-FILTER (read trimming and continamination filtering), ERNE-MAP (core alignment tool/algorithm), ERNE-BS5 (bisulfite treated reads aligner), and ERNE-PMAP/ERNE-PBS5 (distributed versions of the aligners), -
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Feris MP3-Organizer
Tool for organizing your MP3 collection
Organize MP3 files. Motivation: I use Recordify 2016 to create MP3 files based on a playlist. These files are stored all in one folder. They have ID3 tags for artist, album and title, but the track number is missing. So the files will be played in the wrong order lexicographicaly. Feris MP3-Organizer takes care about sorting and adds the track number based on the file timestamps. The sorted directory structure is: "[ARTIST]/[ALBUM]/[TRACK]-[TITLE]". If the files are recorded in... -
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MutAid
MutAid: Sanger and NGS based pipeline for mutation screening.
...MutAid can analyze and interpret raw sequencing data produced by Sanger or several NGS sequencing platforms. It performs format conversion, base calling, quality trimming, filtering, read mapping, variant calling, variant annotation and co-analyze Sanger and NGS data under a single platform. It is capable of analyzing reads from multiple patients in a single run to create a list of potential disease causing base substitutions as well as deletions and insertions. MutAid has been developed for expert and non-expert users and supports four sequencing platforms (Sanger, Illumina, 454 and Ion Torrent) and five read mappers including BWA,TMAP, Bowtie,Bowtie2 and GSNAP and four variant callers -
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Freemind Search Plugin
Plugin to allow search from multiple Freemind maps
This is a plugin for FreeMind ( https://sourceforge.net/projects/freemind ) The main app only allows you to search the current open map. This plugin will allow you to search multiple maps for chosen key words. Code now at https://github.com/leonarduk/freemindsearchplugin -
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Strandseq-InvertR
predicts inversions in Strand-seq data
Invert.R is a custom, R-based bioinformatic package that localizes and genotypes putative inversions in single cells. The program systematically assesses strand orientation of Strand-seq libraries using a read-based sliding window strategy to calculate Watson-Crick ratios. It assigns locale strand states based on these ratios and predicts inversions based on regional changes in strand state. The source code of this package is freely available. -
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GroupServer
A mailing list manager with an excellent web interface
GroupServer is a mailing list manager: an email sent to one address is then sent on to many people. In this way it is a list server like GNU Mailman. GroupServer also has an integrated web interface, so you can use the web to post, read the archives, and administer your groups. It is a bit like Google Groups. GroupServer gives you an open source system under your control: your groups, on your site, on your hardware. -
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Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms.
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FreeMethods for JAVA
Some useful functions for JAVA and ANDROID
This opensource package is licensed under CC by NC 4.0. It have functions to read and write files in java and android, validate data (ValidAction), create alarms, access ftp, send sms, format date and decimal numbers, and other useful things. Used on the ABC Diabetes e Metabolismo App for Android. -
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fast_count_multi
Extremely fast NGS read counter
Counts NGS read alignments against GTF annotations in a multithreaded and scalable fashion. Benchmark: 8 core 1M annotations for 2Gb sorted reads ~30 seconds compared to ~28 minutes for bedtools multicov. Files include: fast_count_multi - reports all counts and RPKM, multithreading support fast_count_deseq - reports gene counts in deseq compatible format, multithreading support fast_count - reports all counts with no multithreading support.
