Search Results for "read" - Page 63
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Showing 3586 open source projects for "read"
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1
QuickRNASeq
A pipeline for large scale RNA-seq data analysis
We have implemented QuickRNASeq, an open-source based pipeline for large scale RNA-seq data analysis. QuickRNASeq takes advantage of parallel computing resources, a careful selection of previously published algorithms for RNA-seq read mapping, counting and quality control, and a three-stage strategy to build a fully automated workflow. We also implemented built-in functionalities to detect sample swapping or mislabeling in large-scale RNA-seq studies. Our pipeline significantly lifts large-scale RNA-seq data analysis to the next level of automation and visualization. ... -
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Time Travel Project
A project for open source time travel with computers.
...The computer code here is for experimenting and playing with temporal cryptography. For more information please look at the wiki here and my open source time travel code. Also please see my web-sights and read my blogs. Enjoy, Reactor1967 -
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PBSuite
Software for Long-Read Sequencing Data from PacBio
...PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants. -
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Mpge
Mpge
...The attacker MacBook is in listening and expected the reverse shell from the target Mac iBook PowerPC G4 that receive a package and when user click on file .pkg and insert the user password, the attacker receive a reverse shell of target. For more details read Features and User Reviews. -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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NICOS
Client/Server based experiment and instrument control system
Client/Server based experiment and instrument control system -
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ViralFusionSeq [VFS]
Accurately discover viral integration events and fusion transcripts
...https://hpc.nih.gov/apps/ViralFusionSeq/ ViralFusionSeq (VFS) is a versatile high-throughput sequencing (HTS) tool for discovering viral integration events and reconstruct fusion transcripts at single-base resolution. VFS combines soft-clipping information, read-pair analysis, and targeted de novo assembly to discover and annotate viral-human fusion events. A simple yet effective empirical statistical model is used to evaluate the quality of fusion breakpoints. Minimal user defined parameters are required. Source code with user manual and installation guide of VFS is available at sourceforge's "Files" section. ... -
7
ws2300
Python driver for the LaCrosse WS-2300
Ws2300 manipulates the LaCrosse WS-2300 weather station via its RS232/USB interface. It can read and write values, and can continuously log data from WS-2300 to a file or SQL database. All available documentation can be read online at http://ws2300.sourceforge.net/ -
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A Movie Collector CRUD
A simple Movie Collection App CRUD style.
A Movie Collector CRUD I have added a simple CRUD (Create-Read-Update-Delete) application I created from one of my apps. This works with MySQL. I am not going into a allot of detail about your server and how to set it up. If you have a web server running MySQL, you should be well enough versed in using this. Just upload the AMovieCollector folder to your web root directory. Using PHPMyAdmin (or whatever your choice is) create a "blank" db called AMovieCollector. -
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Validate Address Using Google Api
Simple | Validate Address by using Google Location API
...This App validate any address entered by user and gives accurate result including Area, City, State and Country. The App is written in core php and using Google Reverse GeoLocation API. Note: GeoLocation API is free for limited request per day. Read More about Tutorial & Demo: http://sgeek.org/how-to-validate-address-google-reverse-geolocation-api/ -
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10
Short-Pair
Sensitive Short Read Homology Search for Paired-End Reads
The profi le-based homology search method designed for short reads by taking advantage of the paired-end sequencing properties. Short-Pair is designed for NGS data that lack reference genomes. -
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stylefmt
stylefmt is a tool that automatically formats stylesheets
stylefmt is a tool that automatically formats CSS according to stylelint rules. stylefmt'd code is easier to write. Never worry about minor formatting concerns while hacking away. Easier to read, when all code looks the same you need not mentally convert others' formatting style into something you can understand. Easier to maintain, mechanical changes to the source don't cause unrelated changes to the file's formatting; diffs show only the real changes. Uncontroversial, never have a debate about spacing or brace position ever again! ... -
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SteamEngine is a new open-source UO server emulator coded in C#, which can read and run Sphere scripts. It`s domains are supposed to be extreme customizability even for non-programmers, and a clean and readable codebase. The project is now abandoned. The "intended for the public" phase ended long ago. The "OldCode" repository is that (if that still works). Then for a while we intended it for the UO shard moria.cz, but that didn't succeed either, and the shard is now defunct. ...
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DailyText-Voice
Read out jw.org daily text on mobile
The DailyText-Voice android app crawls jw.org website and reads out loud the daily text in the notification bar of your android device. -
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QR Generator
QR Code Generator
QR Code Generator for Debian/Ubuntu using python-qr with drag and drop files to read an code it! -
15
MangAddict
An XBMC-like manga reader.
MangAddict is an XMBC-like manga reader that lets you download and read manga. MIGRATED TO GITHUB: https://github.com/Deconimus/mangaddict Features: - search and download Manga - organize your manga - automatically opens what you read last at startup - lets you share your program-data with services like dropbox, for use on multiple computers - locked-width reading mode for long pages (like in "The Gamer" or "ReLife") (press L) Quickstart Guide: - Make sure Java (8 or up) is installed and in your path variables... -
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Smart Defrag is a safe, stable and easy-to-use disk defragmenter that provides users maximum hard disk performance automatically and intelligently. With the new generation of ultra-fast defrag engine, Smart Defrag 5 can not only defragment users' HDD but also trim SSD to accelerate disk read/write speed and enhance disk durability. Users can easily defrag large files and consolidate free spaces with the newly added Large File Defrag and Free Space Defrag for more efficient defragmentation. Also, users can enjoy top game experience with Game Optimize in Smart Defrag 5. What's new in this version: More compatible with the latest Windows 10 Optimized process for better user experience More efficient defragment with improved defrag engine Updated multiple languages Fixed occasional registration error Fixed known bugs
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experix laboratory control system
instrument control, data acquisition display and analysis
Experix is a command-line driven environment for laboratory data acquisition and device control and graphical presentation and analysis of data. Written in C for GNU-Linux . Tested on PC and Raspberry Pi. The core is written very generally in order to support applications by means of script files. Device interfaces: PCMCIA daq (2 devices tested) via kernel module with interrupt handler and memory-mapped data; USB daq (1 device tested) using libusbx; running an equipment servicing program... -
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Raspbian Read-Only
Raspbian Read-Only
Raspbian Read-Only, as its name indicates, is a read-only distribution of Raspbian. But it has also been minimized to have a small footprint, low resource utilization and fast boot times. You can use Raspbian Read-Only as the base for your Raspberry Pi projects, since there’s no unnecessary packages installed. This makes it fast, reliable and a perfect framework for your projects. -
19
UMI-Reducer
collapsing technical duplicates via Unique Molecular Identifiers
...Here we report the development of UMI-Reducer, a new computational tool for processing and differentiating PCR duplicates from biological duplicates. UMI-Reducer uses UMIs and the mapping position of the read to identify and collapse reads that are technical duplicates. Remaining true biological reads are further used for a bias-free estimate of mRNA abundance in the original lysate. This strategy is of particular use for libraries made from low amounts of starting material, which typically require additional cycles of PCR. -
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Unix GNU Windows
Packages to create a Unix like environment under MS-Windows
At this point this project is mainly wpkg which is a replica of dpkg and apt-get that works under Microsoft Windows and Unices. Since version 0.7.0 it works very nicely as it includes most of the important functionality of dpkg (i.e. most everything except dselect functions.) Otherwise, the Unix GNU Windows is expected to be a large set of packages that wpkg can handle. Packages of all the software available under MinGW and GnuWin32 so you can painlessly build a complete Unix like... -
21
PMM-Lab
Predictive Microbial Modeling plug-in for KNIME
...PMM-Lab has been initiated and provided by the Federal Institute for Risk Assessment - BfR (Berlin, Germany). The software is in Beta status. Before using the software you have to read and accept the license and disclaimer (https://sourceforge.net/p/pmmlab/wiki/Disclaimer/). If you do not agree, do not use this software. -
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Ampare Read Books Records
Record which book you read , how many page , status , progress and mor
Ampare Read Books Records is a console software written in python that automatically track which book already read , how many page , status , progress , delete and more. Coming to Launchpad PPA soon . Need some help -
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ingap-cdg
codon-based de Bruijn graph algorithm for gene construction
...Here we present a novel algorithm, inGAP-CDG, for effective construction of full-length and non-redundant CDSs from unassembled transcriptomes. inGAP-CDG achieves this by combining a newly developed codon-based de bruijn graph to simplify the assembly process and a machine learning based approach to filter false positives. Compared with other methods, inGAP-CDG exhibits significantly increased predicted CDS length and robustness to sequencing errors and varied read length. -
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Rrd2Svg
Java classes for converting the collectd's RRD files into the SVG.
...Please look into: http://oss.oetiker.ch/rrdtool/ https://collectd.org/ On: http://oss.oetiker.ch/rrdtool/rrdworld/index.en.html https://collectd.org/related.shtml the good tools are listed, that can extract the data from the RRD files and can draw the graphs. Rrd2Svg is the tool that draws the graph into the SVG file. To read the RRD files, some of the classes in Rrd2Svg are based on: RRD4J As for RRD4J, please look into: https://github.com/rrd4j/rrd4j $. How to use it ? The class for the command line is: com.aboutjun.rrd2svg.util.Runner4Pipe4Svg and it is specified as the main class of the JAR file. So its usage is: java -jar rrd2svg_X_Y.jar <root for RRD> <root for SVG> 1) <root for RRD> is: The root directory of the subdirectories for the RRD files. 2) <root for SVG> is: The root directory of the subdirectories for the SVG files. -
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CopyRightNoticeGenerator
Shell script and template for the GPL copy right notice.
...This tool walks down through the source directory tree. Within each directory node, it reads the files. By the file extension, you can specify which kind of the files to be read. While iterating those files, it inserts the comment lines for the copyright notice into each of them. Finally, the new files are written to the corresponding directory node under the destination directory tree. $. Default templates As default, I wrote the templates of the copryright notice of: GNU General Public License version 3 Apache License, Version 2.0 for the files with: .java .xml .sh .txt extensions...
