Search Results for "data analysis" - Page 53
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Showing 2661 open source projects for "data analysis"
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This RRDTool Framework provides a central HTTP-based service for import into standard RRD DBs and graph generation. A lightweight, easily extendable agent for the data sources is pushing updates with minimal resource consumption on the master service.
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MUMAL2
Multivariate analysis of MS/MS data using ML techniques
Program described in the paper: MUMAL2: Improving sensitivity in shotgun proteomics using cost sensitive artificial neural networks and a threshold selector algorithm, 2016. By Fabio R. Cerqueira; Adilson M. Ricardo; Alcione P. Oliveira; Armin Graber; Christian Baumgartner. -
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Spark Python Notebooks
Apache Spark & Python (pySpark) tutorials for Big Data Analysis
Spark Python Notebooks is a curated collection of example Jupyter notebooks designed to help developers and data engineers learn Apache Spark using Python in an interactive environment. Rather than only providing static code files, this project uses notebooks to teach practical data processing workflows, exposing users to real Spark programming patterns like working with RDDs, DataFrames, and distributed computations. These notebooks often demonstrate how to transform, analyze, and visualize... -
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ICE (Interval Calculator for Engineer)
Interval Calculator for Engineer
ICE is a simple mathematical calculator with very useful shortcuts for Engineer: works natively with tolerance, can run Monte Carlo analysis, uses engineer notation, includes most of the day by day functions used by engineers. -
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It gives facility of collecting tweets through Twitter Streaming API w.r.t different search criteria and to save tweets in CSV and ARFF (WEKA) file formats.
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Gimias
Graphical Interface for Medical Image Analysis and Simulation
GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development. -
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Mass-based dissimilarity
A data dependent dissimilarity measure based on mass estimation.
This software calculates the mass-based dissimilarity matrix for data mining algorithms relying on a distance measure. References: Overcoming Key Weaknesses of Distance-based Neighbourhood Methods using a Data Dependent Dissimilarity Measure. KDD 2016 http://dx.doi.org/10.1145/2939672.2939779 The source code, presentation slide and poster are attached under "Files". The presentation video in KDD 2016 is published on https://youtu.be/eotD_-SuEoo . Since this software is licensed... -
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BioC
We describe a simple XML format to share text documents and annotation
A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are... -
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VITAMINS
Visual and Insitu Analytics for Molecular Interactive Simulation
A framework to support the high performance analysis and visualisation of molecular dynamics trajectories directly acquired in-situ while the simulation is running, or read from files. Vitamins relies on the FlowVR software and comes with binding with Gromacs. Vitamins (Visual and In Situ Analytics for Molecular Interactive Simulation) is an open source framework for the analysis and visualisation of large molecular dynamics trajectories directly acquired in-situ while the simulation... -
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Data Science Specialization
Course materials for the Data Science Specialization on Coursera
...It spans essential topics such as R programming, data cleaning, exploratory data analysis, statistical inference, regression models, machine learning, and practical data science projects. By providing centralized resources, the repo makes it easier for students to practice concepts and replicate examples from the curriculum. It also offers a structured view of how multiple disciplines—programming, statistics, and applied data analysis—come together in a professional workflow. -
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SeqPig
Use Apache Pig to process your large sequencing datasets!
SeqPig is a library for Apache Pig for the distributed analysis of large sequencing datasets. It provides import and export functions for file formats commonly used for sequencing data, as well as a collection of Pig user-defined-functions (UDF’s) to help process aligned and unaligned sequence data. Currently SeqPig supports BAM/SAM, FastQ and Qseq input and output. For more information see the manual at http://seqpig.sourceforge.net/ -
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E-Reader
Extreem Reader for Cosmological simulation data P-Gadet2 and ART codes
Extreem Reader for Cosmological simulation data P-Gadet2 and ART codes.It conserves memory by using memory mapped files. Contains some basic analysis tools such a KD-Tree, Minimum Spanning Tree, and rendering module using PMViewer algorithm. -
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SHORE is a Next Generation Sequencing data analysis suite. Please find the manual at http://shore.sourceforge.net/wiki
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TraceInspector
Offline Wily Transaction Inspector 0.16.7.3 BETA
Offline Wily Transaction Inspector is a Java standalone application with which one can analyze trace files offline generated by Wily Introscope Workstation or Webview. -
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WIMSi
Bioinformatics Tools for the Anaysis of DNA Methylation Data
Genome-wide DNA methylation analyses find only modest correlations between differential methylation at gene promoters and expression. We created a new approach to methylation analysis based on shape-similarity that finds stronger associations between methylation and expression than previously observed. WIMSi includes both DISCOVERY and GENE LIST tools. The DISCOVERY tool is designed to discover patterns of methylation that correlate with differential expression, with minimal prior assumptions about what patterns should exist in the data. ... -
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Attitude Estimator
A C++ implementation of a nonlinear 3D IMU fusion algorithm.
Attitude Estimator is a generic platform-independent C++ library that implements an IMU sensor fusion algorithm. Up to 3-axis gyroscope, accelerometer and magnetometer data can be processed into a full 3D quaternion orientation estimate, with the use of a nonlinear Passive Complementary Filter. The library is targeted at robotic applications, but is by no means limited to this. Features of the estimator include gyro bias estimation, transient quick learning, multiple estimation algorithms, tuneable estimator parameters, and near-global stability backed by theoretical analysis. ... -
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scFvMiner
Scripts for analysing NGS data
These scripts written in java can be used for deep sequencing analysis of the scFv antibodies from a synthetic antibody library and yields complete sequence information on the randomized areas of antibodies enriched from the library by phage display. The methods are descriped in Lövgen, J., Pursiheimo, J.P., Pyykkö, M., Salmi, J. & Lamminmäki, U. (2016) Next generation sequencing of all variable loops of synthetic single framework scFv – application in anti-HDL antibody selections. New... -
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A tool for extracting and preprocessing spectral count data for label-free quantitative proteomic analysis. This program is designed to be used with the Trans-Proteomic Pipeline (TPP).
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newsscrape
news headline collecting for analysis in determining the category
newsscrape is web scraping for news headline to analyse on how it relates to a news category. - It extracts RSS feed from Google News. - Each news headline is matched against Google News category like Entertainment, Sports, etc. - Called from scheduler to collect this data at 5 minutes interval and be accumulated in a database. - It contains R statistical computing scripts to learn the pattern on words in the headline resulting a particular category. - To test its accuracy in... -
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Buridan
Tracker for buridan experiments, and analysis for trajectory data
Buritrack is a program to track individual Drosophila fruit flies online with any camera as they walk in Buridan's paradigm. Available for Macs and PCs. The program extracts the coordinate locations of the fly and stores them in a text file. CeTrAn: centroid trajectory analysis: Tools written in R to analyze the flies' trajectories. Other types of trajectories may also be analyzed using the software. -
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A 100% pure Java Swing ASN.1 analysis utility for inspecting arbitrary BER-encoded data files. It allows inspection of data with unknown structure, can drill down to any nesting level and allows to interpret embedded OCTET STRING data recursively.
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SPRITE
Parallel SNP detection pipeline
SPRITE is an open-source software package providing a parallel implementation of the Single Nucleotide Polymorphisms (SNP) detection genomic data analysis workflow. It consists of three tools: PRUNE for read alignment, SAMPA for intermediate file processing, and PARSNIP for parallel SNP calling. -
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LOOS
Analyze molecular simulation data
LOOS is a light-weight object oriented software library for creating new tools for analyzing molecular simulation data, written in C++. The main design goal is to allow casual programmers to easily implement new analysis methods. THIS PAGE IS NO LONGER UPDATED. Please see https://github.com/GrossfieldLab/loos for all recent developments -
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GNomEx
A Genomic LIMS and Data Repository
Our source code is now on GitHub: https://github.com/hci-gnomex/gnomex. Please refer to GitHub for the latest code. GNomEx is Genomic LIMS and Data Repository. It holds annotated experiments and downstream analysis and serves data tracks to popular genome browsers such as IGB, IGV, and UCSC genome browser. The LIMS handles all aspects of the experiment from order through results delivery. Experiment platforms supported include Illumina HiSeq, MiSeq, iScan, ABI Sanger sequencing, Affy and Agilent Microarrays, Sequenom MassArray and Bioanalyzer. ... -
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Cress Tool Suite
Cress is a comprehensive toolset for graphical service/workflow design
Cress (Communication Representation Employing Systematic Specification) allows graphical description of a wide variety of services such as in data communications/telecommunications, but Cress is not limited to this. The approach allows services to be described graphically as (work)flows of activities. Cress diagrams are automatically translated into formal languages for rigorous analysis and verification, and are also automatically translated into implementation languages for deployment and validation. ...