Search Results for "binary analysis tool" - Page 49
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Showing 1962 open source projects for "binary analysis tool"
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Census is a comprehensive cross-platform project manager and integration hub for NONMEM, the gold standard tool for model-based pharmacometric data analysis.
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SecStAnT
Secondary Structure Analysis Tool for data selection and statistics
SecStAnT is a tool for the automatic creation of data-sets of structures from Protein Data Bank (PDB) with user-defined structural composition, and for the calculation of their internal variables distributions. SecStAnT is able to 1. Select from PDB data sets of structures based on user specified secondary structures (defined based on internal PDB classification or on DSSP) and/or sequence motives. 2. Build Data-sets at different levels of resolution (all atoms, only backbone, only... -
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PPSeq: Parallel NGS Analysis
Parallel Processing for Next-Generation Sequencing (NGS) Analysis
High-throughput next generation sequencing (NGS) technology has quickly emerged as a powerful tool in many aspects of biomedical research. However, along with its rapid development, the data magnitude and analysis complexity for NGS far exceed the capacity and capability of traditional small-scale computing facilities, such as multithreading algorithms on standalone workstations. To address this issue, here we present a solution using the ever-increasing supply of processing power by massive parallel processing (MPP) systems. -
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Free-SA
Free-SA is report generating tool for web, proxy and mail log files
Free-SA is logs processor and report generating tool. It can be used to control traffic usage, to evaluate conformance to the Internet access security policies, to investigate security incidents, to evaluate web server efficiency and to detect troubles with server configuration. -
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OrthoRBH
Rapidly identify orthologous cDNA sequences in related species
...It performs batch blast searches, so it is ideal for large multi-gene families. After collecting candidate sequences, it performs sequence alignment and deposits sequences into a fasta sequence file for downstream molecular evolutionary analysis. -
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A protein alignment curation tool using Local Covariation from "Protein Sequence Alignment Analysis by Local Covariation: Coevolution Statistics Detect Benchmark Alignment Errors" by Dickson et al. published in PLoS ONE on June 8, 2012.
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sentiment
AFINN-based sentiment analysis for Node.js
Sentiment is a simple and lightweight sentiment analysis tool for Node.js that evaluates the polarity of text by scoring words based on positive and negative sentiment. -
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Mole
Automatic SQL Injection Exploitation Tool
Mole is an automatic SQL Injection exploitation tool. Only by providing a vulnerable URL and a valid string on the site it can detect the injection and exploit it, either by using the union technique or a boolean query based technique. The Mole uses a command based interface, allowing the user to indicate the action he wants to perform easily. The CLI also provides auto-completion on both commands and command arguments, making the user type as less as possible. -
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Clone Notifier is a tool that detects and visualizes change information of code clones (i.e., code fragments that have identical or similar code fragment(s) in source code ) . It provides information of new clones generated by copy-and-paste and bad clones occurred by inconsistent modification. Please refer to following for datail. https://sourceforge.net/projects/clonenotifier/files/manual_japanese.pdf ( manual in japanese)...
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FishingCNV
Copy number variation (CNV) detection in exome sequencing data
FishingCNV, a software tool developed at McGill University, is a tool for comprehensive analysis of rare copy number variations in high-throughput exome sequencing data. The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs. The program comes in 2 different releases * GUI version (FishingCNV_X.X.X.zip) * Command line version (FishingCNV_X.X_pipeline) Browse through our files to find the different releases. -
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FlyDataAnalyzer
Software Tool for Processing and Analysis of Propagating Channel Measu
Software Tool for Processing and Analysis of Propagating Channel Measurements. Fly Data Analyzer is the university project (CTU in Prague). It is used in research measurements for input data validation and time synchronization. Test data you can find in download section. -
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BioLemmatizer
Lemmatization tool for morphological analysis of biomedical literature
The BioLemmatizer is a domain-specific lemmatization tool for the morphological analysis of biomedical literature. It is tailored to the biological domain through integration of several published lexical resources related to molecular biology. It focuses on the inflectional morphology of English, including the plural form of nouns, the conjugations of verbs, and the comparative and superlative form of adjectives and adverbs. -
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RFC 5424 Syslog viewer
A RFC 5424 syslog viewer
A simple syslog viewer which uses the syslog format described in RFC 5424. The viewer is written in C# and uses .NET 3.5 or higher. This tool uses objectlistview component from http://objectlistview.sourceforge.net -
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Cellset is an image-analysis tool developed to quickly analyse the properties of plant root cells in confocal microsope images.
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BioSimplify is an open source tool written in Java that introduces and helps in using the bag-of-simplified-sentences (BOSS) model for automatic discourse analysis of English text. This tool is optimized for biomedical scientific literature.
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PIN
Provenance in NetLogo
This tool can trace, capture, query and visualize the dependency provenance in NetLogo. It consists of four main components: a source code analyzer used to automatically add probes to the model's source code, a NetLogo extension for capturing the provenance traces generated from probes, a non-preprocessing (NP) provenance slicing technique for computing provenance slices using provenance traces, and a visualization component for visualizing the provenance slices. It is compatible with... -
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SOMOMOTO
Software Modularization and Monitoring Tool
An Eclipse plug-in to monitor and act against the deterioration of software modularity in Java source code. On going development, with a prototype available. -
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Anteater
Annotation Tool to Extract Endangered Animals from Text Resources
The goal of this project is the extraction the information listed below from texts downloaded from the Federal Register (https://www.federalregister.gov). The texts are mainly applications for permits, notices about given permits, etc. This software tool is developed by the Max Planck Institute for the History of Science (http://www.mpiwg-berlin.mpg.de) in collaboration with Dirk Wintergrün and Etienne Benson. -
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The developed graphical interface is based on the SKILL language which is a Lisp dialect used as a scripting language and PCell (Parameterized Cells) description language used in many EDA software suites by Cadence Design Systems.
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BotF Patcher
A patch tool & database for Star Trek: Birth of the Federation.
BotF Patcher is a tool for adding and removing binary patches to Trek.exe from the PC game "Star Trek: Birth of the Federation". There is a database of patches included, developed by members of www.startrekmodding.com. -
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A cross platform dual channel FFT based Acoustic Analysis Tool to help engineers analyze live professional sound systems using the transfer function. One feature is the ability to capture four sample plots, average them, and invert to aid in final EQ
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vonMises
Package for dealing with the von Mises periodogram
This is the package of C++ programs facilitating the practical use of the von Mises periodogram. The von Mises periodogram is a data-analysis period-search tool that models the periodic signal with the so-called von Mises function, K exp(nu cos x). The package can be used to compute the periodogram itself, as well as its detection significance levels. It can also perform some Monte Carlo simulations of the periodogram. The details of the theory are given in the following refereed paper: Baluev R.V., 2013, MNRAS, V. 431, P.1167-1179. ... -
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ViStream (http://davis.wpi.edu/xmdv/downloads/) is a tool for the visual analysis of multivariate streaming data. It supports a number of computational data analysis methods and provides numerous visualizations and interactions for exploring dynamic data.
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DHIS2 JDMart Offline tool
Offline Data Analysis Tool
This tool is designed to help users download data from their DHIS2 servers for use when they are offline.
