Search Results for "detection" - Page 47
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Showing 1991 open source projects for "detection"
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SPRITE
Parallel SNP detection pipeline
SPRITE is an open-source software package providing a parallel implementation of the Single Nucleotide Polymorphisms (SNP) detection genomic data analysis workflow. It consists of three tools: PRUNE for read alignment, SAMPA for intermediate file processing, and PARSNIP for parallel SNP calling. -
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To exploit all available information from the family structure we developed CATCH, an algorithm that combines genotyped SNPs of all family members for the optimal detection of Runs Of Homozygosity (ROH) and exome sequencing data from one affected individual to identify putative causative variants in consanguineous families. CATCH proved to be effective in discovering known or putative new causative variants in
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Dimension Balls
A public domain cross platform 3D game
...Have looked at the code for other 3D games and there are mostly the same problems around collision detection and "hacks" to get it to "work". -
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IO-Tools
Java utilities for byte streams, readers and format detection
...In order to to find wiki, forums and issue trackers please refer to the subproject home page: http://io-tools.sourceforge.net/easystream/index.html * Wazformat is focused on format detection of input streams. In order to to find wiki, forums and issue trackers please refer to the subproject home page: http://sourceforge.net/projects/easystream.io-tools.p -
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Tomcat for Large Scale Deployments
Use one Apache Tomcat installation to run multiple Tomcat instances
...because you already have many tomcats and you don't want to migrate them one by one anymore because your company doesn't want to pay for a TCServer or a TCat server for the moment Features : run multiple tomcat instances with only one runtime easy migration (just upgrade the tomcat folder) JVM monitoring based on Java Service Wrapper psi-probe embedded automatic port allocation Roadmap : global overview of the cluster automatic node detection easy deployment of -
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PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks. Homepage has migrated to https://github.com/hklarner/PyBoolNet This page is only maintained to keep links alive.
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REDO
REDO - RNA Editing Detection in Organelle
REDO is a comprehensive application tool for identifying RNA editing events in organelles based on variant call results (VCF files). It is a suite of Perl scripts and can work easily and directly in any operating system installed Perl and R Environment. The stringent rule depended filters and statistical filters are used in REDO for reducing false positive rate. It can provide detailed annotations, statistics and figures for RNA editing sites. REDO also can detect RNA editing events in... -
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SLMSuite
A suite of algorithms for segmenting genomic profiles
SLMSuite is a collection of algorithms, based on shifting level models (SLM), for segmenting genomic profiles generated by array and second generation sequencing experiments for the detection of genomic regions involved in CNVs. The SLMSuite contain an R library with the segmentation algorithms and three wrappers that allow to use them in Python, Ruby and C++. #### Installation #### After download extract the SLMSuite files from the command line with: tar -xvf slmsuite-1.0.tar.bz2 #### Usage #### You can find a comprehensive manual inside the doc/ folder. ... -
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ARIA
Retinal vessel detection using MATLAB
NOTE: This project is now hosted at GitHub. Please follow the link below to visit its new home. -
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projet SERHuM
first person shooter
This projet is an unfinished game project of mine I started in 2002. It features a hand made .map files (valve hammer) parser and processor, and a bunch of code to display it like a game engine would. it has collision detection, and recently lightmapping, no mesh import, it has a console and a camera pathtrack demo recorder :) a discussion of the implementation of the lightmapper here: https://motsd1inge.wordpress.com/2016/03/29/light-rendering-2/ -
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skewer
A fast and sensitive adapter trimmer for illumina paired-end sequences
This program implements a novel dynamic programming algorithm dedicated to the task of adapter trimming and it is specially designed for processing illumina paired-end sequences. -
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de novo assembly validation
de novo clustering of assembled contigs into two groups
This project deals with de novo assembled contigs to cluster them into two groups forming the lengthwise clusters. These two groups are correctly assembled contigs and wrongly assembled contigs. For non-model organisms, without reference genome, it is very hard to state that which contig is correct and which is not. With this project, the proposed unsupervised clustering method (K-means) based clustering is done utilizing the depth of reads mapping based coverage information. The coverage... -
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Door Detection
Interesting region extraction for door detection.
This project improves the door detection accuracy by extracting the interesting region from an input image. Thus, omitting the irrelevant region of the image. This project runs on ROS. -
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Metasploit Framework
Metasploit Framework
...Beyond raw exploitation, the framework includes post-exploitation tooling for lateral movement, persistence, data exfiltration simulations, and evidence collection, enabling red teams to exercise detection and incident response workflows. -
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============ ***IMPORTANT*** PLEASE NOTE THAT PYTBULL IS NO LONGER MAINTAINED AND HAS BEEN PORTED BY netrunn3r HERE: https://github.com/netrunn3r/pytbull-ng. YOU SHOULD USE pytbull-ng INSTEAD. THANK YOU. ============ pytbull is an Intrusion Detection/Prevention System (IDS/IPS) Testing Framework for Snort, Suricata and any IDS/IPS that generates an alert file. It can be used to test the detection and blocking capabilities of an IDS/IPS and to validate config.
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Copy Number Analysis for Targeted Resequencing (CONTRA) is a tool for copy number variation (CNV) detection for targeted resequencing data such as those from whole-exome capture data.
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BNP-Homology
Alignment data for Protein Remote Homology Search
Alignment data from the application of a Bayesian mixture model to protein remote homology detection. -
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Fluxy is a toolset to support detection of fast-flux domains used by fast-flux botnets. The toolset includes the library, the command-line tool, and FireFox plugin.
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PowerSploit PowerShell
A PowerShell Post-Exploitation Framework
...Because the modules can be used to both demonstrate weaknesses and to exploit them, the project is typically referenced in threat emulation, penetration testing, and defensive research to understand attacker capabilities. Responsible use centers on authorized assessments: defenders use the toolkit to validate monitoring and detection, while operators apply its lessons to patch, harden, and instrument systems. -
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3C-analyzer
The detection of chromatin interactions
3C-analyzer is a computational method used for the detection of significant chromatin interactions from 3C-seq. -
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olego
OLego – short or long RNA-seq read mapping to discover exon junction
OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adopts a seeding and extension scheme, and does not rely on a separate external mapper. It achieves high sensitivity of junction detection by using very small seeds (12-14 nt), efficiently mapped using Burrows-Wheeler transform (BWT) and FM-index. This also makes it particularly sensitive for discovering small exons. It is implemented in C++ with full support of multiple threading, to allow fast processing of large-scale data. -
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Newscoop
The open content management system for news.
The open content management system for professional journalists. Features include multiple author management, issue-and-section based publishing, geolocation, multilingual content management, and a templating engine supporting HTML5 & mobile. -
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vanishingPoint
Vanishing points detection
Detection of multiple finite/infinite vanishing points using MSAC. -
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Creates interactive plots of data lines over a time scale. Automatic detection of input format and scale will result in instantaneous results without any need for configuration.
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DBpedia Spotlight
DBpedia Spotlight is a tool for automatically annotating
It is a tool for automatically annotating mentions of DBpedia resources in text, providing a solution for linking unstructured information sources to the Linked Open Data cloud through DBpedia. With a four step approach, DBpedia Spotlight performs named entity extraction, including entity detection and name resolution. It can also be used for named entity recognition, amongst other information extraction tasks. Empower the user experience reusing, interlinking and making semantic queries among high-quality open datasets, extracting meaning from unstructured data.
