Search Results for "binary analysis tool" - Page 46
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Showing 1963 open source projects for "binary analysis tool"
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Secure File Transfer for Windows with Cerberus by RedwoodCerberus supports unlimited users and connections on a single IP, with built-in encryption, 2FA, and a browser-based web client — all deployable in under 15 minutes with a 25-day free trial.
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NGSbinningpytools
Python tools for binning NGS scaffolds to various genomes.
Next generation sequencing has opened new avenues for sequencing prokaryotes which were difficult or either impossible to culture. Now, it is possible to sequence all organisms present in a metagenomic community. However, a critical problem is to determine the host organism for each genomic fragment present in the dataset. This project provides the computational tools for assigning the organismal identity for each genomic scaffold in the given dataset. For more detailed documentation... -
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TAMeBS
A sensitive bisulfite-sequencing read mapping tool
TAMeBS-0.4 is designed for mapping BS reads on to a reference genome and providing simple analysis of methylation status of each cytosine in genome. It has perfect capability to detect many more uniquely mapped reads that other existing tools while achieving an excellent balance between sensitivity and precision. The recent version works best for single-end BS reads generated from directional protocal. Moreover, insertion and deletion are not taken into account in the alignemnt process. -
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miRNA Temporal Analyzer (mirnaTA)
Differential expression analysis tool for miRNAs in temporal studies
The microRNA Temporal Analyzer (mirnaTA) is a bioinformatics tool which can be used to identify differentially expressed miRNAs in temporal studies. It is implemented in Perl and R package (>= 2.13.0) and can be run across multiple platforms such as Linux, Mac and Windows. The mirnaTA requires that users provide data from a minimum of two time points and analyze up to 20 time points. To normalize data and remove technical variability, Normal Quantile Transformation (NQT) was used, and the... -
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Domain Analyzer Security Tool
Finds all the security information for a given domain name
Domain analyzer is a security analysis tool which automatically discovers and reports information about the given domain. Its main purpose is to analyze domains in an unattended way. -
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IMPACT is an integrated multi-read peak calling tool for ChIP-Seq data. IMPACT utilizes multi-reads in calling peaks and provides users with high-confidence peaks. In addition, IMPACT provides a completely integrated pipeline which produces downstream analysis results such as motif discovery and peak-to-gene annotation.
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Source Navigator NG is a source code analysis tool. With it, you can edit your source code, display relationships between classes and functions and members, and display call trees. You can navigate your source code and easily get to declarations or implementations of functions, variables and macros (commonly called "symbols") which helps you discovering and mapping unknown source code for enhancement or maintenance tasks.
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SnowMicroPyn
Python based reader for SnowMicroPen® .pnt measurements
SnowMicroPyn is an opensource reader for SnowMicroPen® files in binary .pnt format. The reader is Python based and published as source code as well as compiled executable for Windows, Linux and Mac. The software is preliminary, thus please report bugs. For further information, please read the Readme.txt in the download section. The SnowMicroPen® (SMP) is developed by the WSL Institute for Snow and Avalanche Research, Davos. The SMP is the first high-resolution snow penetrometer. It is... -
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compariSong is an audio tool to support query by singing/humming. It compares a database of popular songs with a hummed-by-user melody and returns the closest matches.
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Khawas
An Arabic Corpora Processing Tool
The new version is available at https://sourceforge.net/projects/ghawwasv4/ -
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BRACIL
ChIP-seq analysis tool
Binding Resolution Amplifier and Cooperative Interaction Locator (BRACIL) is a blind-deconvolution model that integrates ChIP-seq coverage with motif discovery. BRACIL predicts binding site locations with high-resolution and also cooperative interactions in ChIP-seq data. -
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The National Library of New Zealand's Metadata Extraction Tool automatically extracts preservation-related metadata from digital files, then output that metadata in XML formats. It can be used through a graphical user interface or command-line interface. Please take the latest code from 'https://github.com/DIA-NZ/Metadata-Extraction-Tool.git'. The code on source forge will not be updated henceforth as it is moved to github.
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PSniff
A Graphical Network Traffic Analysis Tool
A Graphical Network Traffic Analysis Tool -
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NOTE: The library code compatible with audacity has migrated to https://github.com/claytonotey/libsbsms A subband sinusoidal modeling library/command line tool/gui for time stretching and pitch scaling audio. Download the sbsms package for the source or the win32/mac wxSBSMSPlayer package for the gui binaries.
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Bayesian Estimated Core Genome
A pipeline for estimating the core genome of a set of genome sequences
...As well as calculating the estimated core genome, tools are also provided for the calculation of median pairwise distances for alignments generated by Genome Comparator for each gene based on the reference genome. Finally, there is a tool for generating the necessary files to create the genome diagrams seen in van Tonder et al. [2] using Circos [3]. 1. Jolley KA, Maiden MC. BIGSdb: Scalable analysis of bacterial genome variation at the population level. BMC Bioinformatics 2010, 11:595. 2. van Tonder AJ, Mistry S, et al.Defining the estimated core genome of bacterial populations using a Bayesian decision model. ... -
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AnalysesOracle Performance Doctor is a tool which helps you to understand the behavior of your application on Oracle database level. The tool does: 1. Extract execution plan for all SQLs executed by specified db user and print it to file on server side. 2. For all executed SQL statements the tool will provide more performance version of sql text by using built-in module dbms_sqltune.
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GtilHEVCAnalyzer
An open-source bitstream analyzer for HEVC
Gitl HEVC Analyzer is a tool for bitstream analysis for HEVC. It is released under Apache License 2.0. In addition, it's NOT for commercial use. If you want to use it for commercial purpose, please contact us. If you are not using it to develop weapons, produce or sell illegal drugs, and if you are not a terrorist, we will give your a commercial version for free. -
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noSisyphos
Embedded Rapid Application Development
The main goal of this project is to provide a rapid application development tool (including a framework) for developing application (if possible) without coding (or scripting) for the GUI. This system should be modular, which means, it's possible to add own components. The IDE (aka Tantalus) of the project must be able to handle also the self implemented components, without a recompile. It's possible to work parallel for the gui, the information are stored in XML, but for usage the data are transformed into a binary format, which decrease the code size and increase the speed of execution. -
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SimiTriX-SimiTetra
Similarity, Comparative genomic, Visualization, Eclipse RCP, SimiTri
This application system is based on Eclipse RCP, and it uses the JFreeChart and JOGL library to implement the chart drawing and OpenGL. There are some scripts to generate similarity data for main application and to analysis result. It is an useful tool to visualize relative similarity relationship between different datasets. -
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RDFConvert
commandline syntax convertor for RDF
RDFConvert is a simple command-line tool for converting RDF file betweeen different syntax formats. It is based on the OpenRDF Rio parser toolkit, and currently supports RDF/XML, Trig, Trix, Turtle, N3, N-Triples, RDF/JSON, JSON-LD, Sesame Binary RDF and N-Quads. -
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Calculate Semantic Similarity
Calculate Semantic Similarity between the Sentences
...The result is a tool that is more stable and several gigabytes smaller than DISCO, yet more powerful than the Classifier4j's Vector-Space analysis. PLEASE BE AWARE: There are 98,376 words in a collection, and each word has the unique directory and a TXT file. This may cause developing environments to overload. -
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SWP Project
SWP is for Weighted Points
SWP is a script language to manipulate sets of isolated weighted point, mainly analysis of fractal and other statistical properties of such sets. Originally started as a tool to explore fractal properties of cosmic fractal like large-scale distribution of galaxies. Could be used for any similar sets either. -
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Encryption with symmetric-key algorithm Kirmah - generate keys with exotic chars - redefine key length - key mark to ensure decryption capabilities - mix data - fast with multiprocessing - possible compression - gui on gtk3 - cli tool - python3 DEPENDENCIES : ======== python3, python-gobject, gobject-introspection, pygtk 3 modes are available to encrypt : ======== - compression (full / disabled or only final step) - random (simulate a random order - based on crypted key - to randomize data) - mix (mix data according to a generated map - based on crypted key - with addition of noise) Process is as follow : ======== encrypt : file > [ compress > ] encrypt > [randomiz data > mix data > compress > ] file.kmh decrypt: file.kmh > [ uncompress > unmix data > unrandomiz data] > decrypt > [uncompress > ] file ======== for encrypt/decrypt large binary files, use the fastest alternative : split/merge
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FBSAT
An efficient analysis pipeline for family-based sequencing
Through our tool a user can perform the whole analysis parallelized on UNIX HPC systems controlled by SGE or PBS automatically. Non-bioinformatics researchers can easily and quickly identify variants that are potentially causing diseases while minimizing false positives and artifacts. -
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Allele Builder
python-based tool for multi-allele gene analysis
Allele Builder aims at analysis of multi-allele and multi-locus genes as well as microbiome study. In contrast to the other software enabling 454 data prcessing the Allele Builder allows the usage of long amplicons with two-tailed reads. Allele Builder effectively eliminates chimeric reads coming from artificial recombination between two PCR amplicons. -
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High Speed Image Analysis for MATLAB
An integrated toolbox for MATLAB analysis of high-speed video
High-speed imaging is a powerful tool for capturing fast events, but converting qualitative video observations to quantitative analysis is challenging. This toolbox is being developed to support analysis of high-speed video in Hall thrusters and other plasma devices. In particular, it enables visualization and Fourier analysis of rotating spoke instabilities in the annular Hall thruster discharge channel.
