Search Results for "binary analysis tool" - Page 40
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Showing 1963 open source projects for "binary analysis tool"
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bat
Go implement CLI, cURL-like tool for humans
bat is a Go-implemented, cURL-like command-line HTTP client designed to be “for humans,” emphasizing an expressive and intuitive syntax. It allows developers to test, debug, and generally interact with HTTP servers using concise commands that feel more like a small DSL than raw cURL flags. The tool supports a wide range of HTTP operations including custom methods, headers, JSON payloads, form submissions, file uploads, authentication and proxy configuration. Its README showcases simple “hello world” usage as well as more advanced scenarios, such as inspecting the exact request being sent via print options. Because it is written in Go and distributed as a single binary, it is easy to install and use across platforms, and it can even be run inside Docker containers for isolated workflows. ... -
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CanReg5 (moved to Github)
Canreg5 is a software package for population based cancer registries
Cancer registries need a tool to input, store, check and analyse their data. If these data are also coded and verified in a standard way, it facilitates the production of comparable analyses across registry populations. The main goal of the CanReg5 project is to provide a flexible and easy to use tool to accomplish these objectives. CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data. -
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GnuCash Export Modifier
Perl utility that modifies GnuCash Trasnaction Exports
This Perl utility script will allow you to quick strip the split or utility file and display transaction month and year information. It is intended simply to save time when uploading using that export in any spreadsheet tool to perform analysis. -
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This tool helps you to reverse engineer UML Sequence Diagram for your java program at runtime. It works well with both complex java programs (that have multiple threads) and J2EE applications deployed on Application Servers.
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BaseNet
Bacterial sRNA analysis tool
Perform gene expression profiling and predict novel sRNAs and automatically correlate co-differentially expressed sRNA-mRNA pairs to enhance target prediction and construct sRNA-mediated regulatory network. -
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A project-based tool for the annotation, manipulation, and analysis of genetic variants from next-gen sequencing studies.
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JDigger
Java performance analysis tool
This project has been renamed and moved to moved to: https://github.com/denkbar/djigger -
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Copy Number Analysis for Targeted Resequencing (CONTRA) is a tool for copy number variation (CNV) detection for targeted resequencing data such as those from whole-exome capture data.
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ZipSnapNG
Portable multi-platform backup tool with advanced features
ZipSnapNG is a portable multi-platform backup tool which, despite its simplicity (200Kb and no installation required), provides advanced features such as incremental backup, data deduplication, encryption and configurable retention. It may run through the command line or within a graphical interface. -
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CRAFT HPC Floating-point Analysis
CRAFT: Configurable Runtime Analysis for Floating-point Tuning
CRAFT (Configurable Runtime Analysis for Floating-point Tuning) for HPC (High-Performance Computing) uses binary instrumentation to perform runtime analysis of floating-point code, detecting cancellations and making precision level recommendations. NOTE: THIS PROJECT HAS MOVED TO GITHUB!!!! https://github.com/crafthpc/craft -
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Open Cezeri Library
Effective Linear Algebra and Computer Vision Library with JAVA
OCL stands for Open Cezeri Library (yet another linear algebra and matrix library). This library provides rapid coding as matlab ease of use. To learn for library please try to use test examples at OpenCezeriLibrary\test\test. It is originally developed at el-cezeri laboratory of Siirt University, in order to establish generic framework of reusable components and software tools for machine vision, machine learning, AI and robotic applications. Currently, it holds following main concepts 1-... -
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CSV Transformer
transforms xml to csv
The CSV Transformer is a data processing tool which transforms .xml-Files to comma separated values. The CSV Transformer was created in a load and performance testing project, the use case was to be able to transform 2800 configuration files of a big banking application to a single .csv-File. With this single file it was possible to compare the whole configuration between two releases with the already available tool CSV Comparator. This enabled the team to verify if there were any... -
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QPlot
QPlot - 2d plotting tool based on Qwt
QPlot - 2d plotting tool based on Qwt project (http://qwt.sf.net). QPlot reads mission INI-files and draw 2-d graphics. Data may read from binary and text files both. Plot area may have 2-4 axis. QPlot may used as Gnuplot alternative. QPlot may used to descovery Qwt as example programm. -
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Klonwerk
advanced variability management tool
Klonwerk is an advanced and easy-to-use tool for reactive variability management and large-scale software reuse. It allows you to automatically clone and modify directories of textural or binary files (e.g. code, architecture, documentation), based on conceptual feature/decision models. -
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GCORE-SIB
A fast gene-gene interaction test for discordant sib pairs
GCORE-sib is an efficient gene-gene interaction tool for discordant sib pairs. It is useful for genome-wide gene-gene interaction analysis in GWAS using discordant sib pairs. -
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BI Report for OrangeHRM
By using open source tool we have provided a BI report for OrangeHRM
By using open source products such as PostgreSQL, Mondrian, Pentaho BI, ETL tools to provide OLAP reports from OrangeHRM open source version. Send us your feedback for the report -
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SOAPfuse
a tool for identifying fusion transcripts from paired-end RNA-Seq data
SOAPfuse is an open source tool developed for genome-wide detection of fusion transcripts from paired-end RNA-Seq data. By comparing with previously released tools, SOAPfuse has a good performance. It is developed in perl, and only be used on linux OS. It requires about 8G memory to run whole analysis. So far, it is developed only for analysis on human being RNA-Seq data. -
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binsnip
Snip out chunks from a binary input stream...
The binsnip tool is made to snip out chunks from a binary input stream or from a binary file in real time. It uses an efficient ring-buffer algorithm rather then a string algorithm to search and cut, insert or replace sequences. -
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(NCS) NEQUIM Contact System
Tool for analyze of interactions in ligand-protein complexes
NEQUIM Contact System (NCS) is a system to generate and analyze interaction vectors of protein-ligand complexes. Core features include multiple views of vectors, multiple selection options, cluster analysis and generation of interaction vector model. The input could be from PDB format or from files generated by automatic docking softwares AutoDock/Vina or Surflex. -
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ncPRO-seq
Non-Coding RNA PROfiling from sRNA-seq
ncPRO-seq is a tool for annotation and profiling of ncRNAs from smallRNA sequencing data. It aims to interrogate and perform detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, piRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. ############# Docker version : download and run Dockerfile (go in "Files" section) ############# GitHub : https://github.com/jbrayet/ncpro-seq -
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barchiv
blob archive and vcs tool similar to git, hg, git-annex or boar
This is a kind of vcs or archive tool mainly desinged for binary data. It is similar to vcs tools like git, hg, git-annex or boar. Main design goal ist - to deal with hugh binary data files - partial pull/push handling - immutable data archive - simple metadata format of archive - due to immutability other backup tools like rsync or copy could be used alternatively - platform independent -
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WiiGesture for Fex/AIR
Allows inclusion of Gesture Interaction via WiiMote in Web-Apps
...page_id=50) to retrieve the sensor data and an internal algorithm based on template matching recognizes performed gestures in real-time. For easier gesture training, a so called WiiGesture-Learning desktop tool was developed that automatically generates gesture templates by performing gestures with at least one repetition. The result is an XML file that can be exported and included in the WiiGesture-API so that trained gestures are known to the API. For research purposes also an analysis tool was developed to compare gestures from different participants/users. ... -
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Web Application Protection
Tool to detect and correct vulnerabilities in PHP web applications
...WAP detects the following vulnerabilities: - SQL injection using MySQL, PostgreSQL and DB2 DBMS - Reflected cross-site scripting (XSS) - Stored XSS - Remote file inclusion - Local file inclusion - Directory traversal - Source code disclosure - OS command injection - PHP code injection WAP is a static analysis tool that performs taint analysis to detect vulnerabilities, tracking malicious users inputs and checking if they reach calls of sensitive functions. It has a low rate of false positives because has implemented a data mining module to predict false positives when detects vulnerabilities. The output of the tool is: - shows the vulnerabilities found and how they are corrected - new files with the corrections -
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exd
A command line tool to manage bytes in hex dumps or packet captures
Command-line tool to examine or edit bytes in hex, octal, binary, or in packet capture (pcap) dumps. Exd is intended to be used in conjunction with hex dump tools such as xxd, od, hexdump, or hd, and with packet capture dump tools such as tshark and text2pcap. --- metadata tags byte hex octal binary pcap packet packet dump hexdump -
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EDDA
Experiment Design for Differential Abundance Analysis
EDDA is a tool for systematic assessment of the impact of experimental design and the statistical test used on the ability to detect differential abundance. EDDA can aid in the design of a range of common experiments such as RNA-seq, ChIP-seq, Nanostring assays, RIP-seq and Metagenomic sequencing, and enables researchers to comprehensively investigate the impact of experimental decisions on the ability to detect differential abundance. More details of EDDA can be found at Luo, Huaien et al....
