Search Results for "structural engineering" - Page 4

A tool to identify genomic structural variations from paired-end and mate-pair sequencing data

This is a plugin written for Google Sketchup to perform structural analysis. Currently the plugin is limited to pin jointed trusses but the fully developed version of the plugin will include rigid jointed 3d frames with various loading conditions

THIS IS NO LONGER THE HOME FOR SEURAT. PLEASE GO TO https://sites.google.com/site/seuratsomatic/ --- Seurat is an sequence analysis program for somatic mutation and allelic imbalance discovery in paired tumor and normal genome and transcriptome data.

This is an approach that complements previous methods for reliable homozygous structural variation identification. Our approach accurately determines genotype and breakpoints relative to a reference genome based on de novo assembly of Illumina Genome Analyzer sequencing data. In this method, we examined only homozygous structural variations because detecting heterozygous structural variations requires assembly of haplotype sequences, which is not yet possible using existing assemblers.

TreQ aims at mapping reads from next generation sequencing (NGS) data to a reference genome, with emphasis on accuracy in the presence of structural variations like insertions and deletions.

A tool for structural variation discovery on genomes using high throughput sequencing technologies.

Fachwerk3D calculates three-dimensional strut-and-tie models used by structural engineers for analysing and designing reinforced concrete structures. The program only uses the equilibrium conditions, thus it is not assuming elastic behaviour.

Fachwerk calculates strut-and-tie models used by structural engineers for analysing and designing reinforced concrete structures. The program only uses the equilibrium conditions, thus it is not assuming elastic behaviour.

Detection of structural variants and indels from Genome/Exome sequencing data

The solid and structural mechanics module for Netgen/NGSolve. It allows to solve linear and non-linear static and dynamic problems.

The Xtal System is a comprehensive suite of small molecule structural solution, refinement and analysis software, supporting both X-ray, neutron and electron diffraction data. It runs on both Unix and MS Win32 platforms and uses tcl/tk graphics.

The TIMTAM (Target Information Management Tracking And More) system implements a secure knowledgebase supporting the management, tracking, and analysis of experimental data associated with structural biology projects.

Graphical editor using HTML5 canvas for input of chemical structures, molecule interactions, as well as protein sequence and 3D structural motifs. Facilitates searches in chemo-informatics, bioinformatics and structural biology .

Gnetman is primarily a netlist translator, capable of translating between formats such as VHDL, Verilog, and SPICE. Only structural gate-level netlists are supported. Various netlist manipulations are supported.

CFD code using Arbitrary Lagrangian Eulerian algorithm.

A structural mechanics finite element application.

ContBeam is a program capable of solving structural configurations of continuous beams on multiple supports. it handles conditions and load combinations provide being output characteristics of the stress and deformation of the structure

HOPPscore is a simple application for evaluating the structural quality of theoretical or experimental protein structures. Protein are evaluated by comparing structure fragments to a reference dictionary of fragments from high resolution structures.

C++ library for protein sequence profile to profile alignment. Implementing numerous known alignment variants in a flexible and manageable architecture.

s2vhdl extracts structural information from SystemC HDL programs. The output is in VHDL code and graphical diagrams. GCC compiler is used as a C++ frontend.

DEXA is dedicated to providing post-experiment signal processing of DiffXAS signals. By combining ab initio theory with measured spectra, structural strain parameters may be extracted from the differential signals at an intrinsic, atomic scale.

MBDyn_sim_suite is a collection of free pre&post-processing tools and simulation models for the open-source multi-body analysis software MBDyn forming a general purpose simulation environment for structural dynamics with an emphasis on wind turbines.

Small Python programs for the structural designer / Pequeños programas para el diseñador de estructuras hechas en Python

This application transcribes basic codons and tells you the amino acid it codes for, the tRNA anti-Codon, and give you a 3D structural model of the amino acid and 2D picture of its chemical structure. Analysis reports can then be printed by the user.

Noemol is a graphical program for calculation of multi-spin nuclear Overhauser effects (nOes) in nuclear magnetic resonance (NMR) spectroscopy, it is a valuable tool for scientists involved in structural biology and chemistry.