Search Results for "r package xmsannotator" - Page 4
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Showing 201 open source projects for "r package xmsannotator"
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MoPAC
The Modular Pipeline for the Analysis of CRISPR screens
To facilitate the comparison of gene essentialities in two or more cell samples, we propose MoPAC (Modular Pipeline for Analysis of CRISPR screens), a Shiny-driven interactive tool for differential essentiality analysis in CRISPR/Cas9 screens. For installation and usage instructions please refer to the wiki page. -
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rpackage conjurer
Synthetic data generation using R
Builds synthetic data applicable across multiple domains. This package also provides flexibility to control data distribution to make it relevant to many industry examples. -
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Open Intro Statistics
An open-source textbook written at the college level
... the "openintro" R package that is available from GitHub (https://github.com/OpenIntroOrg) if you would like to regenerate a figure. Other packages may also occasionally be required. -
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xMSanalyzer
An R package for metabolomics data extraction and quality assessment
xMSanalyzer comprises of utilities that can be classified into four main modules: 1) merging apLCMS or XCMS sample processing results from multiple sets of parameter settings, 2) evaluation of sample quality, feature consistency, and batch-effect, 3) feature matching, and 4) characterization of m/z using KEGG REST; 5) Batch-effect correction using ComBat -
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MANTIS R Package
Multi-locus ANTIgenic Simulator R-package for multi-strain pathogens
This repository contains the most updated code version of MANTIS, the Multi-locus ANTIgenic Simulator R-package. MANTIS is developed and maintained by the Evolutionary Ecology of Infectious Disease (EEID) research group at the Department of Zoology, University of Oxford, UK. For theoretical background please refer to 'MANTIS: an R package that simulates multilocus models of pathogen evolution' (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0598-9 OPEN ACCESS... -
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NanoR
R package built to analyze and compare Nanopore data
NanoR is a package for the statistical language and environment R, tested on Unix, MacOSX and Windows, that allows user-friendly analysis and comparison of 1D MinION and GridION X5 sequencing data within acceptable time frames. -
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HBV interventions model
ODE HBV model and MCMC for fitting HBsAg, HBcAg and HBeAg data.
This code implements the MCMC and ordinary differential equation (ODE) model described in [1]. The core MCMC and ODE code is implemented in C/C++, and is wrapped with an R front end. This is not an R-package (although there are plans to extend the code and eventually make it into an R-package). Please read the PDF file supplied for further instructions on how to use this code. [1] HBV vaccination and PMTCT as elimination tools in the presence of HIV: insights from a clinical cohort... -
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bookdownplus
Use R package bookdown for writing varied types of books and documents
The package bookdownplus (Zhao 2017a) is an extension of R bookdown (Xie 2016). It is a collection of multiple templates on the basis of LaTeX, which is tailored so that I can work happily under the umbrella of bookdown. bookdownplus helps you write academic journal articles, guitar books, chemical equations, mails, calendars, and diaries. bookdown features the collaboration of many fantastic tools. However, an R beginner might be confused or depressed in struggling in the flood of LaTeX, YAML... -
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reacto
A sweet IDE for React.js
Interact with your code: use bricks to play with props, imports or quickly change a component type. Package Manager out of the box: add, upgrade, delete and search dependencies in a flash. Smart and fast autocomplete: automatically find relative path to any file, quick snippets and more to come. Preview components, quickly: press Cmd+R to toggle the component previewer. That's it. Reacto is available for Mac, Windows, and Linux. It can be downloaded from the releases page. There is absolutely... -
KrakenD is a high-performance API Gateway optimized for resource efficiency, capable of managing 70,000 requests per second on a single instance. The stateless architecture allows for straightforward, linear scalability, eliminating the need for complex coordination or database maintenance.
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IMG4DC – Dreamcast Selfboot Toolkit
Generate ready-to-use disc images for your Sega Dreamcast system !
IMG4DC is a tools package containing two utilities to generate selfboot disc images for your Sega Dreamcast: cdi4dc, designed to make Padus DiscJuggler (CDI) images and mds4dc, designed to make Alcohol 120% (MDS/MDF) images. A selfboot image is a disc image format specially prepared to boot on your Dreamcast. In clear, by burning a selfboot image to a standard blank CD-R, the software containted into this disc image will run onto your Dreamcast, as a legit game disc, without any modchip... -
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An R package for metrology. metRology provides classes and calculation and plotting functions for metrology applications, including measurement uncertainty estimation and (eventually) inter-laboratory metrology comparison studies.
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octave-intinf
Infinite-precision integer arithmetic for Octave, written in Octave
... % Exponentiation, division >> f == -b % Logical operators >> [q, r] = intinf_divide (b^2, a) % Divsion and remainder >> x = intinf_rand (100) % Random number (here, with 100 digits) TODO: * Better errors. * Make a package loadable by octave's pkg function. -
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Grinn
graph database and R package for omic data integration
http://kwanjeeraw.github.io/grinn/ -
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JDistlib
Java library of statistical distribution
A Java package that provides routines for various statistical distributions. Based on R version 2.14.1 (continuously updated; current as of R v3.3.0). The major difference is that JDistlib is thread safe. The library contains the density (pdf), cumulative (cdf), quantile, and random number generator (RNG) routines of the following distributions: Ansari, Beta, Binomial, Cauchy, Chi square, Exponential, Fisher's F, Gamma, Geometric, Hypergeometric, Kendall, Logistic, Log normal, Negative binomial... -
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fscaret_shiny
UI for fscaret
User Interface (ui) application which implements the automated feature selection provided by the 'fscaret' package of R-environment. -
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pkg_version-zypper.rb
script to ease managing package upgrades in openSUSE
... of programs for no big reason (usually) and do it only when programs in repository has been updated. NB! It is not an official recommendation to do so as packages have their version number for a reason! I personally have been ignoring RPM versions for years and have not been into any trouble because of that. Usually you'd want to use the script as: sudo ./pkg_version-zypper.rb -f '<' -r -u But you can also take package versions into account: sudo ./pkg_version-zypper.rb -f '<' -r -u -p -
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Peptrix
Label free peptide profiling
... database, which contains all metadata, such as experiment numbers and sample codes, 3) a FTP (File Transport Protocol) server to store all raw mass spectrometry files and processed data, 4) the software package R, which is used for modular statistical calculations, such as the Wilcoxon-Mann-Whitney rank sum test. -
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rDock
A Fast, OpenSource Program for Docking Ligands to Proteins and N.Acids
rDock is a fast and versatile Open Source docking program that can be used to dock small molecules against proteins and nucleic acids. It is designed for High Throughput Virtual Screening (HTVS) campaigns and Binding Mode prediction studies. rDock is mainly written in C++ and accessory scripts and programs are written in C++, perl or python languages. The full rDock software package requires less than 50 MB of hard disk space and it is compilable in all Linux computers. Thanks to its design... -
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xMWAS
An R package for integrative analysis of omics data
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MetabNet
An R package for network analysis of high-resolution metabolomics data
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autoFRK
Automatic Fixed Rank Kriging
An R package 'autoFRK' performs fixed rank kriging for (irregularly located) spatial data using a class of basis functions with multi-resolution features and ordered in terms of their resolutions. The model parameters are estimated by maximum likelihood (ML) and the number of basis functions is determined by Akaike's information criterion (AIC). For spatial data with either one realization or independent replicates, the ML estimates and AIC are efficiently computed using their closed-form... -
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This R package combines biological information (expression data) with theoretical information (miRNA target prediction databases) in order to obtain a curated list of potential miRNA-mRNA interaction pairs.
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R_poRe
An R package to enable visualisation of nanopore sequencing data
The Oxford Nanopore MinION is a revolutionary sequencer with a unique model of data delivery, requiring novel tools for the novice user. This package enables organisation and visualisation of MinION data on the MinION laptop -
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PhyIntOm
PhyloInteractOmics
The R package phyintom (pronounced as phantom) provides tools to perform phylotranscriptomic analyses of highthroughput gene expression data.