Search Results for "graph algorithms" - Page 4
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Showing 165 open source projects for "graph algorithms"
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ingap-sf
a genome scaffolder
inGAP-sf is an effective scaffolder to generate high-quality and continuous scaffolds. inGAP-sf achieves this by using a new strategy based on the combination of Dlink and Plink graphs, in which Dlink is used to increase graph connectivity and to decrease graph complexity and Plink is employed to supervise the traversing process on the Dlink graph. Such advantage greatly facilitates the assembly of short-repeat enriched regions. Moreover, a new comprehensive decision model is developed to eliminate the noise routes accompanying with the introduced Dlink. ... -
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Excel file analysis toolkit
Lays out dependencies (links) between Excel files in a visual graph
Do you have a haystack (legacy) of Excel files that reference each other and you can't see clear anymore? This tools crawls Excel files and builds up a visual graph. It shows which files might be outdated because they reference a file which was modified more recently. The graph is dynamic, you can choose between different layout algorithms and rearrange by hand. Allows you to quickly open the file, dump the graph, dump all links within a file, highlight all the cells that reference other excel files. ... -
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algorithms.js
Classic algorithms and data structures implemented in JavaScript
Traditional Computer Science algorithms and data structures implemented in JavaScript. Algorithms such as collatzConjecture, extendedEuclidean, fastPower, fibonacci, findDivisors, fisherYates, gcd (Greatest common divisor), greatestDifference, lcm (Least common multiple), newtonSqrt, nextPermutation, powerSet, reservoirSampling, shannonEntropy, etc. -
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A educational Java software featuring a graph editor and algorithms animation to learn how the algorithms work. Algorithms: Breadth First Search (BFS), Depth First Search (DFS), Minimum Spanning Tree (Prim), Single-Source Shortest Path (Dijkstra), Maximum Flow (Edmonds-Karp).
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Peklo is a graph editor and an environment for visualizing and comparing different algorithms for some graph-theoretic problems, e.g. flows, shortest path, minimum spanning tree.
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JAGAL: Java Graph Library
Java graph library
JAGAL provides implementations for directed graphs (weighted and unweighted) and varoius types of transition systems as well as utils for graph traversal and modification. JAGAL builds upon the Java library TOVAL (located at http://sourceforge.net/p/toval). To use JAGAL, make sure the TOVAL library is on the build path. This library uses and encloses jGraphX (https://github.com/jgraph/jgraphx). A documentation for JAGAL can be found under http://doku.telematik.uni-freiburg.de/jagal. -
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ISO GrAF
Experimental Java library for reading and writing GrAF/XML files.
The Graph Annotation Framework (GrAF) models linguistic annotations using a data model based on Graph theory and algorithms. The GrAF standard is a work product of ISO TC37SC4 Working Group 1. This Java library is NOT part of the GrAF standard and standoff annotation files produced by the library may not be GrAF compliant. -
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Graffy
Graph Library based on C++ making heavy use of templates and STL
Graffy is a open source Graph Library written completely in C++ in self contained fashion. Features: 1. Reading and Writing from multiple graph formats. 2. Basic Graph Traversal, Connected Components and Paths 3. Centrality Measures 4. Community Detection Algorithms both Global and Local and measures to evaluate community detection algorithms 5. Artificial Graph Generators -
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Algorithms & Data Structures in C++
Algorithms & Data structures in C++
An algorithm is represented by a .h file and placed under include. (one .header file per algorithm.) The demo program for the algorithm demonstration is placed under src. (one demo per algorithm.) After the program passes correctly, please initiate Pull Requests, the code is verified and stored in the library, and the new algorithm implementation is published in the README. TAB = 4 space. set ts=4 in vim. Graph output format is Graphviz Dot format. (the output format of the graph is in dot... -
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HRDAG
Framework for Hierarchical Graph Decomposition
This is a framework used to decompose hierarchical graphs, i.e.,graphs which were created from or contain a hierarchy of modules. Each module is reused several times in the hierarchy. This may be useful to reverse-engineer human constructs like electronic equipment, manufactured machines, or bureaucratic hierarchies; but also to decompose natural constructs like gene-relation or protein-relation nets. -
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Graph-RAT is a database abstraction layer designed to make it easy to use a large library of graph-analysis routines on a database as well as add new kinds of algorithms to data mining.
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nail_systems_biology
NAIL is a toolset for network analysis in the life sciences
...However, different algorithms typically use different input and output data types, are implemented using different technologies, and are demonstrated by application to different biological problems. Because of this, the primary goal of the NAIL project is to provide a straightforward way to use network approaches in the life sciences, and to apply a variety of techniques quickly and easily on the same data. -
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Graphal
Graph algorithms interpreter, IDE, debugger, 3D visualizations.
Graphal is an interpreter of a programming language that is mainly oriented to graph algorithms. There is a command line interpreter and a graphical integrated development environment. The IDE contains text editor for programmers, compilation and script output, advanced debugger and visualization window. The progress of the interpreted and debugged graph algorithm can be displayed in 3D scene. -
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3DScape is the first plug-in which enables three-dimensional network visualization in Cytoscape. 3DScape features include accessing graph appearance, layout algorithm, and animation effects on a series of expression data.
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SPARGEL
An opensource Java graph library. Abandoned, ignore.
...As now, implemented are: * Adjecency graph data structures * Algorithms: SSSP, APSP, Traversal, Min-Cut, Max-Flow, Many types of finding Components * Creating sub graphs, vertice and edge maps that use a function to implement their mapping. Spargel is released under GPLv3 -
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Web graph compression
web graph compression algorithms implementation
This project contains the implementation of web graph compression algorithms developed in Technical University of Łódź by Institute of Applied Computer Science. -
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LTS: Learning to Search
Discriminative subgraph mining by learning from search history
...The purpose of LTS is to find discriminative subgraphs, which are smaller graphs that are embedded in larger graphs that all share a certain trait. A discriminative subgraph can help to characterize a complex graph and can be used to classify new graphs with unknown traits. LTS is an improvement on other subgraph mining algorithms because it uses empirical data from the search history of a first pass to help weed out unpromising search directions. This allows a second pass to spend more time investigating promising areas of search to generate the most discriminative subgraphs more quickly than before. -
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KDT provides domain experts with a simple interface to analyze very large graphs quickly and effectively without requiring knowledge of the underlying graph representation or algorithms. It provides a Python interface and can run on clusters.
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Approximate Subgraph Matching Algorithm
Approximate Subgraph Matching Algorithm for Dependency Graphs
The subgraph matching problem (subgraph isomorphism) is NP-complete. Previously, we designed an exact subgraph matching (ESM) algorithm for dependency graphs using a backtracking approach (http://esmalgorithm.sourceforge.net). We further designed an approximate subgraph matching (ASM) algorithm that is capable of detecting approximate subgraph matching based on a subgraph distance. Assume that the graph G and the subgraph Gs have m and n vertices, and km and kn edges respectively,... -
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MGMF: MapReduce-based Graph Mining Framework provides carefully designed frameworks for various graph mining algorithms and it is fast, efficient, and scalable. The implementation of MGMF is available in this website.
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GrAMP
Graph Algorithm in MetaPost
A software tool to make easily graph algorithm illustrations in MetaPost. The resulting MetaPost-files can e.g. be incorporated in LaTeX-documents. -
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...Calvo, Anindito Aditomo and Luiz Augusto Pizzato (2012), “Using Wikipedia and Conceptual Graph Structures to Generate Questions for Academic Writing Support”, IEEE Transactions on Learning Technologies, vol. 5, no. 3, pp. 251-263.
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Asteroid
A CBLS Engine in SCALA, NOW part of OscaR
Asteroid has been merged with Scampi, to give rise to OScar. Follow us on https://bitbucket.org/oscarlib/oscar/wiki/Home Asteroid offers a powerful framework for developing constraint-based local search solution to combinatorial problems. This technique provides good scalability to real-world problems. It includes a library of standard constraints and invariants to declaratively define the problem you want to solve, and it also provides powerful search mechanisms. -
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NaruGo is game AI project. Current targets are GO board game and Texas Holdem poker. It investigates Genetic programming to build game AI logic. Also EA/GP simulations for TSP, Graph layout and Prisoners Dilemma problem.