Search Results for "genetic algorithm java" - Page 4
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Showing 726 open source projects for "genetic algorithm java"
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DACO-algorithm
A novel transcription factor complex prediction algorithm.
Eukaryotic gene expression is controlled through molecular logic circuits that combine regulatory signals of many different factors. Complexation of transcription factors and other regulatory proteins is a prevailing and highly conserved mechanism of signal integration within critical regulatory pathways and enable to infer controlled genes as well as the exerted regulatory mechanism. We developed DACO (domain-aware cohesiveness optimization), a novel algorithm that combines protein-protein... -
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Bucket Fill Algorithm
Simple Bucket Fill Demo
This is Simple java implementation of bucket fill algorithm .Copy the code and Run in Console or IDE. Draw your shapes and click in the middle to fill the shapes. Precombiled jar for Windows OS https://sourceforge.net/projects/bucket-fill/files/G_BucketFill.jar/download -
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Genetic Algorithm File Fitter, GAFFitter for short, is a tool based on a genetic algorithm (GA) that tries to fit a collection of items, such as files/directories, into as few as possible volumes of a specific size (e.g. CDs or DVDs).
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EECluster
Tool for energy-efficient resource management in HPC clusters
EECluster is software tool for managing the energy-efficient allocation of the cluster resources. EECluster uses a Hybrid Genetic Fuzzy System as the decision-making mechanism that elicits part of its rule base dependent on the cluster workload scenario, delivering good compliance with the administrator preferences. In the latest version, we leverage a more sophisticated and exhaustive model that covers a wider range of environmental aspects and balances service quality and power consumption... -
Enterprise-grade ITSM, for every businessFreshservice is an intuitive, AI-powered platform that helps IT, operations, and business teams deliver exceptional service without the usual complexity. Automate repetitive tasks, resolve issues faster, and provide seamless support across the organization. From managing incidents and assets to driving smarter decisions, Freshservice makes it easy to stay efficient and scale with confidence.
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sijinn
SImple Java Implementation of Neural Network
Alfa version - work in progress. Perseptron network structure. Can be saved in xml format. Training strategies: - Gradient Descent (Batch, Stochastic) - Genetic Breeding Training algorithms: - BPROP (back propagation) - QPROP (quick propagation) - RPROP (resilient propagation) - GENE (genetic neural) Demo: https://sijinn.herokuapp.com/ http://sijinn.appspot.com/network GitHub: https://github.com/surban1974/sijinn Maven <repositories> <repository> <id>neohort-mvn... -
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Venice is a stock market trading programme that supports portfolio management, charting, technical analysis, paper trading and genetic programming. Venice runs in a graphical user interface with online help and has full documentation.
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TEESer
Tool for Engineering Emergent Selforganizing bEhavioR
Teeser is a java-based integration framework for engineering emergent self-organizing behavior in distributed systems. It contains tools for analysis, tuning, macroscopic probing and simulations of distributed systems. Library of tools can be extended and everybody is encouraged to provide and share its tools with the community. The main idea is to provide application designers ability to seamlessly use tools which are helpful to design self-organizing behavior. Designers can continue... -
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JBotSim is a multipurpose dynamic network simulator that allows to quickly prototype a distributed algorithm and test its behavior on a set of static or mobile nodes. If mobile, the nodes can be controlled by the mouse or by program.
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Easy Machine Learning
Easy Machine Learning is a general-purpose dataflow-based system
... platform Easy Machine Learning presents a general-purpose dataflow-based system for easing the process of applying machine learning algorithms to real-world tasks. In the system, a learning task is formulated as a directed acyclic graph (DAG) in which each node represents an operation (e.g. a machine learning algorithm), and each edge represents the flow of the data from one node to its descendants. -
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... of polymorphisms and structural variants, and for further evaluation of predicted variants and identification of mutations related to genotypes. inGAP-family is implemented in Java to provide a platform-independent tool, and to support both command line mode and graphical mode. The output could also be visualized in user-friendly graphical interface for checking SNPs, indels and large-scale structural variants.
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ATTENTION: For more info and latest version, refer to https://github.com/estigma88/jdhtuq. jDHTUQ is a peer-to-peer DHT system based in Chord algorithm, but built like API to generalize the implementation of peer-to-peer DHT systems. jDHTUQ have two fundamental services , put and get of resource.
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Formatomatic
Population Genetic File Creator and Converter
Formatomatic creates infiles for several population genetic analysis programs from csv, genepop or convert* (excel) files. It only handles diploid microsatellite data for now. I may eventually include other read or write formats (email me if there is some functionality you need and I will work on it if I have time). This program was initially developed for in-lab use to format microsatellite data extracted from a custom database system. I have made it available in case it is useful to others... -
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JSiteDescriptor
Binding site descriptor generation for SVM based classification.
A set of java programs that extract coordinate and chemical information from PDB files. The binding site regions are extracted using grid based scheme. For binding site, spatio-chemical descriptor is generated based on PocketMatch algorithm of Dr. Kalidas (author of this project too). -
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TimescapeGlobal
a space-time interpolation geostatistical tool
This software is a time-aware geostatistical tool. Including time variability adds further issues to the already complicated field of geostatistical interpolation. On the other hand, most of the distributions of variables used in Earth and environmental sciences show patterns of change over time, not only in space. This tool is a free, open-source software, based on a generalization of the Inverse Distance Weighted algorithm. It outputs three-dimensional, layered discrete models from which... -
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Genetic Oversampling Weka Plugin
A Weka Plugin that uses a Genetic Algorithm for Data Oversampling
Weka genetic algorithm filter plugin to generate synthetic instances. This Weka Plugin implementation uses a Genetic Algorithm to create new synthetic instances to solve the imbalanced dataset problem. See my master thesis available for download, for further details. -
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popt4jlib
Parallel Optimization Library for Java
popt4jlib is an open-source parallel optimization library for the Java programming language supporting both shared memory and distributed message passing models. Implements a number of meta-heuristic algorithms for Non-Linear Programming, including Genetic Algorithms, Differential Evolution, Evolutionary Algorithms, Simulated Annealing, Particle Swarm Optimization, Firefly Algorithm, Monte-Carlo Search, Local Search algorithms, Gradient-Descent-based algorithms, as well as some well-known... -
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The main purpose of CombiTagger is to read files generated by individual PoS taggers and use them to develop and evaluate combined taggers according to a given combination algorithm. http://aaai.org/ocs/index.php/FLAIRS/2009/paper/download/67/296
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DGRLVQ
Dynamic Generalized Relevance Learning Vector Quantization
Some of the usual problems for Learning vector quantization (LVQ) based methods are that one cannot optimally guess about the number of prototypes required for initialization for multimodal data structures i.e.these algorithms are very sensitive to initialization of prototypes and one has to pre define the optimal number of prototypes before running the algorithm. If a prototype, for some reasons, is ‘outside’ the cluster which it should represent and if there are points of a different... -
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JPIV
Particle Image Velocimetry
JPIV is a platform independent, graphical stand-alone application for Particle Image Velocimetry (PIV) written in Java. PIV is an optical technique for measuring fluid flow velocities. JPIV moved to GitHub. Please visit us at: https://eguvep.github.io/jpiv/ -
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PREESM provides a complete framework for fast prototyping. It generates a simulation and an optimized multiprocessor code from graph descriptions of algorithm and architecture. Please visit the project homepage at http://preesm.sourceforge.net.
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This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.
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Solid Python
A comprehensive gradient-free optimization framework written in Python
Solid is a Python framework for gradient-free optimization. It contains basic versions of many of the most common optimization algorithms that do not require the calculation of gradients, and allows for very rapid development using them. -
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This application allow user to predict dissolution profile of solid dispersion systems based on algorithms like symbolic regression, deep neural networks, random forests or generalized boosted models. Those techniques can be combined to create expert system. Application was created as a part of project K/DSC/004290 subsidy for young researchers from Polish Ministry of Higher Education.
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BioPPSy
A biochemical property prediction system
Computationally predicts the pharmacokinetic properties of drug candidates using Quantitative Structure Property Relationships (QSPR) modelling. Assembles a set of tools and databases for predicting the physical properties of small molecules. The program models a given property's dependence on a collection of molecular and structural descriptors using a training set of molecules. Neural networks and support vector regression are available, as well as linear models. The models generated by... -
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SCEO
Single Cell Event Ordering Algorithm
This is an implementation of the Single Cell Event Ordering algorithm that was described in J. De Bie et al., "Single cell sequencing reveals the origin and the order of mutation acquisition in T-cell acute lymphoblastic leukaemia". Usage: java -jar SCEO.jar input=input.txt output=output.txt N=n with input = input file containing tab delimited matrix with for each gene a (named) row and for each cell a (named) column with the values 1=event present, 0=event absent, -1=NA output = output...
