Search Results for "binary analysis" - Page 4
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Showing 110 open source projects for "binary analysis"
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PyInteraph
analysis of interaction networks in structural ensembles of proteins
PyInteraph is a software research tool for the analysis of structural communication protein ensembles. It has been designed to analyze MD and structural ensembles with attention to binary interactions between residues, such as hydrogen bonds, salt bridges, and hydrophobic interactions. Once the interactions have been calculated, it is able to use different classes of intra- and intermolecular interactions, combined or alone, to calculate comprehensive interaction graphs. ... -
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IP2Location C library enables the user to find the country, region, city, coordinates, zip code, time zone, ISP, domain name, connection type, area code, weather, MCC, MNC, mobile brand name, elevation and usage type that any IP address or hostname originates from. It has been optimized for speed and memory utilization. Developers can use the API to query all IP2Location™ binary databases for applications written in C or supporting static/dynamic library.
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cpR Chemical Pathology interface for R
A graphical user interface to R for use in Clinical Chemistry
...It allows the user to perform Passing Bablok, Deming and Linear Regression and to produce high quality images in any file format for publication. The front end is written in Python 3.3 and PyQt4 and the form was designed using Qt4 Designer. The statistical analysis is written in R. The compiled binary was made with cx_freeze. This software is free and open-source. It is released under the GNU Public license and comes with absolutely no warranty. -
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MatrixUser
A Multi-functional GUI-based Program for Image Processing and Analysis
The MatrixUser project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MatrixUser/ Most of the medical images (e.g. CT, MRI, PET, etc.) comprises multiple frames which represent slices, phases, timing etc. from the same imaging object. Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation. However, within Matlab, most of image manipulation functions are limited or... -
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SnowMicroPyn
Python based reader for SnowMicroPen® .pnt measurements
SnowMicroPyn is an opensource reader for SnowMicroPen® files in binary .pnt format. The reader is Python based and published as source code as well as compiled executable for Windows, Linux and Mac. The software is preliminary, thus please report bugs. For further information, please read the Readme.txt in the download section. The SnowMicroPen® (SMP) is developed by the WSL Institute for Snow and Avalanche Research, Davos. The SMP is the first high-resolution snow penetrometer. It is... -
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PixelDbg
Visualize any data stream, recover images, save images as files.
Turn any data stream into an image and observe various patterns and pictures. Recover images from corrupted or unknown archives (i.e. Windows hibernation files, binary dumps, etc.). Change channel order and pixel format on the fly to interpret given data in different ways. Easily adjust scanline and image tiling while inspecting data. Observe if given data stream has high entropy. Save currently visible data as an image and analyze it later. -
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GENIE (GEne-geNe IntEraction)
GPU based Parallel Gene-Gene Interaction Analysis
...Most of the latest Central Processing Units (CPUs) have multiple cores, whereas Graphics Processing Units (GPUs) also have hundreds of cores and have been recently used to implement faster scientific software. However, currently there are no genetic analysis software packages that allow users to fully utilize the computing power of these multi-core devices for genetic interaction analysis for binary traits. Here we present a novel software package GENIE, which utilizes the power of multiple GPU or CPU processor cores to parallelize the interaction analysis. Citation: Chikkagoudar, S., Wang, K., & Li, M. (2011). ... -
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...If you are using IJBlob in a scientific publication, please cite: Wagner, T and Lipinski, H 2013. IJBlob: An ImageJ Library for Connected Component Analysis and Shape Analysis. Journal of Open Research Software 1(1):e6, DOI: http://dx.doi.org/10.5334/jors.ae
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Udis86 is an easy-to-use minimalistic disassembler library for the x86 and x86-64 instruction set architectures. The primary intent of the design and development of udis86 is to aid software development projects that entail binary code analysis.
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ParaSim
Parallelized calculation of molecular similarities
Diversity assessments and comparisons of large compound databases require calculating similarities of millions of compounds in an affordable time. ParaSim addresses this challenge by parallelizing the calculations according to the number of computing cores available on a single machine. It is optimized for the throughput of very large numbers of query structures against very large numbers of reference structures. As as special feature, ParaSim allows to store and and to access frequently... -
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WaveSorter
A powerful, versatile tool for offilne spike analysis and sorting
WaveSorter emphasizes dynamic visualization and versatility. Slider controls let the user select any coefficient or sample from any of several transforms, which can then be plotted to either axis of a 2D histogram (scatterplot). Within the waveform space, cursor-based controls let the user select subregions of the waveform space or individual waveforms to view. The user may cluster waveforms manually or via one of several popular clustering programs. The classification along with waveform... -
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SpiKeDeteKt
An automatic spike detection program to be used with new KlustaKwik
This is an automatic spike detection program which takes account of probe geometry and produces a .mask file to be used with the new masked version of KlustaKwik. We recommend you use Python 2.6 or 2.7, e.g. a free academic version can be obtained from Entthought Python. The input files for SpiKeDeteKt are: .dat (raw data file) .probe (probe file, described below - user constructed) parameters.py (optional - otherwise it uses defaultparameters.py) SpiKeDeteKt outputs... -
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Tunatch is a binary patch applier, checker, creator and fixer project. Aims to be a platform for Unix systems.
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oscmex
Open Sound Control for MATLAB
...oscmex is primarily used in experimental prototypes characterized by use of real-time media presentation engines and/or sensors or gesture input devices in combination with control and/or numerical analysis running in a MATLAB process. oscmex comprises a set of "mex" binary routines, written in C, that can be loaded and called from MATLAB. The C code makes use of the liblo library (which is distributed under the terms of LGPL), and oscmex is also distributed under the same terms. oscmex is not endorsed by nor representative of MATLAB nor MathWorks. -
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DReport
Console tool for creating directory level reports.
Tool to create a CSV report on directory hierarchies. Listing includes date range. Great for spreadsheet analysis to govern file archival. Another STDNOJ Project. By R.A Nagy -
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process logic expression with binary tree, it can be used on the expert system's facts logic expression especailly infere with database.it needs java6 environment.any question plz contact with me nicky.jcoder@gmail.com
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convbits is a GUI for manipulating decimal, hexadecimal and binary representation of integers
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An interactive binary search tree. The user may interact with the tree by performing rotations, balancing, insertions, and deletions. For educational purposes
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bitstring is a pure Python module designed to help make the creation and analysis of binary data as painless as possible. The latest releases support Python 2.6 and 3.x only. For Python 2.4 and 2.5, plus lots more see the googlecode homepage.
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PerfParse. Storage and analysis of binary performance data produced by Nagios. High quality accurate graphs of live data from standard Nagios plugins. Permanent history of plugin results with advanced analysis tools.
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binspector is a binary inspector that allows for inspection, analysis, and manipulation of binary data. Data can be submitted in multiple formats including as a (binary) file.
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Sgrep (sorted grep) is a much faster alternative to traditional Unix grep when searching large files, because sgrep searches sorted input files using a fast binary search to find matching lines.
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A command line utility to convert wko binary files into comma separated variable files for manipulation in generic analysis tools such as excel.
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Interrogate is a proof-of-concept tool for identification of cryptographic keys in binary material. First and foremost for memory dump analysis and forensics usage. Able to identify AES, Serpent, Twofish and RSA keys as of version 0.0.3.
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This is a neat little tool to visualize binary data in a graphical form. It's really interesting to look at different types of files.
