Search Results for "assembler" - Page 4
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Showing 370 open source projects for "assembler"
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Amberworld is (going to be) an interpreter for the Amiga classic Ambermoon (by Thalion) and games with a similar engine (Dragonflight, Amberstar, Albion). This project needs support, looking for an 680x0 assembler geek.
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MIRA V5 is available only on GitHub! The V4 version released here on SourceForge stay up as some automated release fetching packages rely on V4. MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.
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Phusion2
The genome assembly pipeline based on read clustering
...Setting a minimum threshold of shared k-tuples, the whole set of reads can then be clustered into groups using kmer sharing information in the relational matrix. After obtaining small read clusters with a controllable size, a local assembler can be used to produce contigs. -
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haikuVM
A Java VM for ARDUINO and other micros using the leJOS runtime.
HaikuVM has been started for hobbyists who develop applications for ARDUINO to open the world of JAVA and leJOS. Yes, you can program an ARDUINO with JAVA! HaikuVM is so small that it even runs on an atmega8 (and the ASURO robot). And yes, you can program an ASURO robot with JAVA! And since version 1.4.0 the RCX lego brick. -
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TraRECo
a de novo transcriptome assembler with read error correction
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cpcrslib
Libraries for CPC game development under z88dk and SDCC
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or1k64KPU binutils
GNU assembler/disassembler and other tools for the OR1K64-based KPU
GNU toolchain for gas, binutils, gdb etc modified to support the OR1K64 (OpenRISC 1K 64-bit) -based KPU (general purpose cryptoprocessor) -
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Meraculous-2D
Eukaryotic Genome Assembler
---------------------------------------- IMPORTANT: Meraculous-2D has been superseded by the HipMer assembler, available here: https://sourceforge.net/projects/hipmer/ ----------------------------------------- Meraculous-2D is a whole genome assembler for NGS reads (Illumina) that is capable of assembling large, diploid genomes with modest computational requirements. Features include: - Efficient k-mer counting and deBruijn graph traversal - Two modes of handling of diploid allelic variation - Improved scaffolding that produces more complete assemblies without compromising scaffolding accuracy. ... -
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Fiwix
A UNIX-like kernel for the i386 architecture
FiwixOS 3 is a Fiwix distribution, an operating system made from a software collection that is based upon the Fiwix kernel. It basically comprises a Fiwix kernel, GNU tools, libraries and additional software. All the included software is free and open-source software made available both as compiled binaries and in source code form, which allows modifications to the original software. FiwixOS 3 uses the Newlib v3.1.0 as its C standard library, and the Ext2 as its primary file... -
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Filemgr
Filemgr a BBS file & .tic tosser
Filemgr a BBS file & .tic tosser for Sysops. Currently written in Turbo Pascal and some assembler under Msdos/Windows & Linux in a Dos Box. -
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Visual MASM
Visual MASM - Assembly IDE for Microsoft MASM
Create 16-bit, 32-bit and 64-bit Microsoft Windows and 16-bit MS-DOS applications with Visual MASM for Microsoft Macro Assembler (MASM). -
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In a fit of recreational programming, I wrote this 8080 assembler. God only knows why I picked a 30 year old processor.... I guess I just loved that old processor.. Maybe thats why I have 2 of them in the attic. ..
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APNG Assembler
Creates APNG animation from PNG/TGA image sequence.
Creates highly optimized Animated PNG files from PNG/TGA image sequences. CLI versions available for all major OSes. GUI versions for Windows and macOS. Also, APNG Disassembler can be found at http://sourceforge.net/projects/apngdis -
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Dev65 is a macro assembler, linker and librarian suite for the 6501, 6502, 65C02, 65816 and 65832 family of microprocessors coded in Java for portability. The code is based on a framework that could support other system architectures.
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Classic BCPL for the ATARI ST
BCPL was designed by Martin Richards at Cambridge University (1966)
Here you will find a collection of BCPL tools I've gathered from the net, cleaned up and ported to the Atari ST. This involved fixing bugs, reducing stack usage and making the code compile in 16bit via Pure C (Turbo C for the Atari ST). Source credits include: Martin Richards - BCPL Kit http://www.cl.cam.ac.uk/~mr10/ Robert Nordier (Translated interp to C) http://www.nordier.com/ Serge Vakulenko (Translated cg/syn/trn to C) https://github.com/sergev/b I'm sure there are... -
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GAVGA
A Genetic Algorithm for Viral Genome Assembly
GAVGA is a Genetic Algorithm for Viral Genome Assembly. It can be used in the assembly of small genomes, like viral ones. -
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SimuS
A didatic processor simulator
This is an integrated IDE, consisting of an editor, an assembler and a simulator for an 8-bit didatic processor named Sapiens. It is intended for educational purposes. It is written in Object Pascal, and fully compatible with Lazarus framework. You can find the sources for the version compatible with Raspberry Pi at https://github.com/sottam/simus. Check our new book: https://goo.gl/cSH6rU -
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VTD-XML is the next generation XML parser/indexer/editor/slicer/assembler/xpath-engine that goes beyond DOM, SAX and PULL in performance, memory usage, and ease of use.
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APNG Disassembler
Deconstruct APNG file into a sequence of PNG frames.
This program converts APNG file into a sequence of individual PNG frames. Command-line interface and GUI viersions. Also, APNG Assembler can be found at http://sourceforge.net/projects/apngasm -
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svd2gas
Automatically generate assembly equate statements for STM32Fxx MCU's
Using CMSIS-SVD files, auto generate GNU Assembler equate statements for STM32F* assembly language. The equate list can easily be limited to any register(s) named in the CMSIS-SVD STM32F* definition file. Normally used with arm-none-eabi-as Please see the distribution README for more information. -
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metasort
A metagenome assembler by reducing microbial community
Most current approaches analyze metagenomic data with the participation of reference genomes. However, novel microbial communities extend far beyond the coverage of reference databases and de novo metagenome assembly from complex microbial communities still remains a great challenge. Here we present a novel experimental and bioinformatic framework, metaSort, for effective construction of bacterial genomes from metagenomic samples. MetaSort provides a sorted mini-metagenome approach based on... -
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MaxInfo
Transcriptome assembler for RNA-seq
MaxInfo is an automated transcript discovery and quantification software designing for high-throughput RNA sequencing (RNA-seq). Assembling transcripts from reads are challenging because of the unpredictable uncertainties arising from completing full genome structure with very partial observations. MaxInfo tackles this problem by explicitly reducing the inherent uncertainties in the biological system caused by missing information. -
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Meta Assembler for de novo assembly results. GARM (Genome Assembly Reconciliation and Merging) is a pipeline to merge results from different assemblers or results from different DNA sequencing technologies.
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Apollo85
An emulation of the experimental computer board 85.
An emulation of the experimental computer board 85, called ECB85, including an assembler and a c-compiler. -
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ITD-Assembler
A tool to detect mid sized tandem duplications
This tool uses de novo assembly to detect Tandem Duplications in next gen assembly data. it takes as an input a bam file and outputs results in a custom format. It is linux based and has been developed primarily in haskell, and some parts in C and python.
