Search Results for "parallel" - Page 37
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Showing 1481 open source projects for "parallel"
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GENIE (GEne-geNe IntEraction)
GPU based Parallel Gene-Gene Interaction Analysis
Gene-gene interaction in genetic association studies is computationally intensive when a large number of SNPs are involved. Most of the latest Central Processing Units (CPUs) have multiple cores, whereas Graphics Processing Units (GPUs) also have hundreds of cores and have been recently used to implement faster scientific software. However, currently there are no genetic analysis software packages that allow users to fully utilize the computing power of these multi-core devices for genetic... -
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grn_inference_multigpu
This project is a exhaustive search algoritm for multiple GPUs
...Among the search algorithms already proposed, there is the exhaustive search where the best feature subset is returned, although its computational complexity is unfeasible in almost all situations. The objective of this work is the development of a low cost parallel solution based on GPU architectures for exhaustive search with a viable cost-benefit. We use CUDA , a general purpose parallel programming platform that allows the usage of NVIDIA GPUs to solve complex problems in an efficient way. -
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PCramer
Dense linear solver utilizing Cramer's rule in parallel
This code provides a linear solver based on a parallel application of Cramer's rule. The programming was done in 'C' leveraging the MPI-CH2 libraries for message passing between nodes. This implementation is for dense linear systems and all calculations are done with doubles. -
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Please participate in the SURVEY on rgedit's future: https://www.surveymonkey.com/s/VNMMJMJ your answers are much appreciated! Gedit (Gnome editor, www.gedit.org) plug-in allowing it to become an easy-to-use and yet light-weight IDE for the statistical programming environment, R (www.r-project.org).
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Musket - short read error corrector
a parallel short-read error corrector for Illumina sequencing
...Our performance evaluation results, in terms of correction quality and de novo genome assembly measures, reveal that Musket is consistently one of the top performing substitution-error-based correctors. In addition, Musket is multi-threaded using a master-slave model and demonstrates superior parallel scalability compared to all other evaluated correctors as well as a highly competitive overall execution time. -
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xphire
Cross-company Parallel Half-Identical Region Engine
XPHIRE (Cross-company Parallel Half-Identical Region Engine) can detect Half-Identical Regions of DNA in CSV-data. -
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corunner
A utility to transport files and execute at remote in prarallel
Are you maitaining many machines and bored with the tedious operation of logging to those machines one by one just for checking the machine's status? Or are you losing patient for your simple script that have to run command in those machines in sequence? The corunner is just for those senarios. It's designed to speed up execution in your machines. It can executes command in handreds of or thousands of machines concurrently. Provide it with your files and command and the machines' location,... -
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PASHA: Parallelized Short Read Assembly
One of the fastest parallel short read assemblers for large genomes.
PASHA is a parallel short read assembler for large genomes using de Bruijn graphs. Taking advantage of both shared-memory multi-core CPUs and distributed-memory compute clusters, PASHA has demonstrated its potential to perform high-quality de-novo assembly of large genomes in reasonable time with modest computing resources. Our evaluation using three small real paired-end datasets shows that PASHA is able to produce better assemblies with comparable genome coverage and mis-assembly rates compared to three leading assemblers: Velvet, ABySS and SOAPdenovo. ... -
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The Finite Difference Time Domain (FDTD) method is a powerfull numerical technique to solve the Maxwell equations. Here you can find parallel FDTD codes developed by Zsolt Szabó. The codes can be run under UNIX and Windows operating systems.
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NetDSpar, a Cytoscape plugin is developed to efficiently analyze the robustness-related dynamics and feed-forward/feedback loop structures of biological networks. This is an improved plugin of NetDS (http://netds.sourceforge.net/). We employed OpenCL library to make the time-consuming parts of NetDS are processed in parallel. Finally, in comparison to the original NetDS, NetDSpar performed large-scale robustness calculation and feed-forward/feedback loop examination faster by several hundred times for a human signaling network with 1609 nodes and 5063 links.
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KISSmenu
KeepItSimple: organize&integrate your tools in a non-/interactive menu
Do you have dozens of tools with dozens of parameters? KISSmenu helps you to organize them, to integrate them and to run them interactively in a terminal based menu or automatically, e.g. starting it up as a cron job. Development or tooling environment: shortcut based menu of commands, which can be used both interactively and non-interactively. Middleware: simply integrates various software through environment variables. Really simple! A 500 lines long bash script easy to maintain,... -
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The parallelized FDTD Schrodinger Solver implements a parallel algorithm for solving the time-independent 3d Schrodinger equation using the finite difference time domain (FDTD) method. See the Hosted Apps > MediaWiki menu item for more information.
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Overlap Images
Overlaps two images
This project's purpose is to overlap two images in sequential and parallel mode. At the beginning you upload the first image, then the second image uploaded is resized in order to match the first one. The images are overlapped and the time operation is calculated in order to see the difference between the operations (sequential or parallel). The results are passed to the UI. -
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BriCS
SaaS for running simulation models in the cloud
The Bristol Cloud Service simulation runner is a cloud computing Software as a Service designed to enable users to quickly launch simulation code on Amazon AWS' Elastic Compute Cloud (EC2). BRiCS is written in Python using the Django framework and interacts with EC2 using the boto API. BriCS enables multiple simulation runs to be launched in parallel from a web browser. Model configuration (parameters) files are uploaded via the browser and results files are downloadable on completion. BriCS enables researchers with software simulation models to access the rapid scale out opportunities of the cloud. Why wait days or weeks for a series of trials to complete when you can run them in parallel in the time it takes to complete one? -
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Xboo loader
Use the XBoo cable to upload a file to a GBA
This is a command line application to upload a file to a Gameboy Advance (GBA or GBA SP). It can work on Windows, Linux and *BSD platforms. It uses the parallel port, and can use PCMCIA, PCI and PCI express parallel port adapters. It won't work with USB to parallel adapters. See this video for another alternative using the USB port. https://www.youtube.com/watch?v=Zfmj_KPE_L4 -
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It is a software to program ISP based 8051 controllers(89SXX) on Linux. The software decodes the hex file entered from the command line and send it to controller's flash memory using PC's parallel port.The hardware connections are very minimal.
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prog89s52
Utility for programming an AT89S52 via a parallel port.
prog89S52 is a utility for Linux on the PC, allowing programming of Atmel's AT89S52 microcontroller via the parallel printer port. Atmel's 89S are programmable via an SPI port and therefore require absolutely no additional components in order to program them in-system. This program requires a standard "Centronics" type PC parallel port (a bidirectional, EPP or ECP port is not required). A 5-way cable is required to connect the microcontroller to the port; wiring information is given in the included manual page. ... -
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FlowVR is an open source middleware tailored for high performance in situ data processing and analytics running on large parallel machines
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VisIVO Gateway Portlets
Portlets to submit VisIVO Server jobs
Portlets to submit VisIVO Server jobs to analyze and create customized views of 3D renderings from astrophysical datasets. -
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hyprebin
Binary libraries for hyprebased parallel software
This is a binary distribution of hypre/libblas/liblapack open source libraries to ease the installation of software developed with these platforms on user systems. Focus is on the distribution of easy to install RPM or debian packages which are not available at the source download site. -
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CAO_3D
3D CAO Software for UPA engine.
First School project : We were a 3 group people, who had to create a software for UPA engine. I was involved to create the 3D model who communicate with the software in TCP sockets, and this model had to move in parallel with the real model. The software was create with C++, C#, SDL and OpenGL. -
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Java Parallel Loops
Parallel loops in Java
A library that makes writing parallel (multithreaded) for loops in Java 5+ easier. It also supports parallel processing of lists and arrays, asynchronous invocation, progress and completion notification, computation interruption and results merging.
