Search Results for "parallel" - Page 36
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Showing 1481 open source projects for "parallel"
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Parallel processing bash script
Simple bash script to organize distributed calculations through SSH
It was used once to manage executions of single static binary file on several remote machines with different inputs and to yield outputs after. The script contains small reference and a few comments which can help to use it and to modify. -
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Humm and Strumm
A 3D, fully concurrent game engine
The Humm and Strumm Engine is a Free Software 3D game engine. Its goal is to provide a properly multithreaded, scalable engine to the FOSS community under the GPLv3 license, to encourage FOSS gaming. -
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BioParallelCorporaExtractor
BioPCE: a tool to extract parallel corpora of biomedical texts
BioParallelCorporaExtractor (BioPCE) is Python tool to extract parallel corpora of biomedical texts. It's a joint work between Elise Prieur-Gaston, Antonio Jimeno Yepes and Aurélie Névéol. In the "Files" tab in this page, you can find the perl script used to web-crawl publisher data and a sample input file created for 5 MEDLINE citations. Each line in the input file should contain the PubMed identifier (PMID) and its Digital Object Idetifier (DOI) separated by the pipe symbol. ... -
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genericmock
generic bits of useful code
...Everything is provided under BSD license so you don't need to worry about incorporating this into your commercial application. Bits of code: - redirecting standard streams (stdin, stdout, stderr) - getting access to a program's streams - run parallel tasks .... Visit the wiki for details: https://sourceforge.net/p/genericmock/wiki/Home/ -
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FAUST2
Formal Abstractions of Uncountable-STate STochastic processes
...A dtMP model is specified in MATLAB and abstracted as a finite-state Markov chain or Markov decision processes. The abstraction procedure runs in MATLAB and employs parallel computations and fast manipulations based on vector calculus. The abstract model is formally put in relationship with the concrete dtMP via a user-defined maximum threshold on the approximation error introduced by the abstraction procedure. FAUST2 allows exporting the abstract model to well-known probabilistic model checkers, such as PRISM or MRMC. ... -
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Hierarchical cluster engine HCE
Hierarchical Cluster Engine project
The main idea of this project – to implement the solution that can be used to: construct custom network mesh or distributed network cluster structure with several relations types between nodes, formalize the data flow processing goes from upper node level central source point to down nodes and backward, formalize the management requests handling from multiple source points, support native reducing of multiple nodes results (aggregation, duplicates elimination, sorting and so on), internally support powerful full-text search engine and data storage, provide transactions-less and transactional requests processing, support flexible run-time changes of cluster infrastructure, have many languages bindings for client-side integration APIs in one product build on C++ language... Also, HCE includes the highlighter application. This is utility to get fast parallel multi-algorithmic textual patterns highlighting. It provides cli UI, works as filter console tool and uses json format of prot -
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socketReader sends and receives messages via TCP/IP socket and file system. M:N routing is supported. Many communication paths can be configured in parallel. Both, Linux/Unix and Windows, are supported.
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Drid
Multi-Purpose Automation Grid
Console-based tool that will allow for multiple types of automation testing to run in parallel. Written in Python -
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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TCM's bin2img converter
a powerful tool for sharing non-image files on image hosting sites
...It converts files into the PNG image format and is able to directly upload to an image hosting site. You can split files to circumvent file size limits, with a nice side effect: parallel, faster downloads. Using image hosting sites for sharing files has advantages over conventional One-click hosting services: No download queue and full speed. 1-click downloads are possible by using a special URL protocol: b2i:// The tool creates real, valid PNG files and encodes the files into pixel colors based on the byte values instead of breaking file format specs -
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Route11
C++ flow-based metaprogramming library
Route11 is a powerful C++ flow-based metaprogramming library that allows you to create and route complex dataflow systems at compile-time. Route11 uses Template Metaprogramming to construct complex "process systems" defined by static relationships between "process primitives". A process primitive is a generic host class that inherits a "process policy". The process policy defines the specific behavior of a process primitive. The general term: "process" can refer to either one of these... -
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HECTOR
HECTOR is parallel error corrector for 454 datasets
We present HECTOR, a parallel multistage k-hopo spectrum based homopolymer-length error corrector for 454 sequencing data. -
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MIDI Step Sequencer - Cythar
Polyphonic MIDI sequencer
A pattern-oriented, polyphonic MIDI step-sequencer, which makes its own path. 16 parallel patterns with six tracks and 16 bars – equating to 256 bars & 96 tracks. Videos: https://www.youtube.com/watch?v=0UK7US2NwC0&list=PLZCmwv5U3kDP-3jldIzOErbnBOdGjJV_M Source: https://github.com/monotomy/CYTHAR-Sequenzer Check out B-Step Sequencer too: http://b-step.monoplugs.com . A similar, new Project. -
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Fast Matrix for Java
General purpose matrix utilities for Java in Parallel Computing
Fast Matrix for Java (fm4j) is a general-purpose matrix utility library for computing with dense matrices. fm4j encapsulated different underlying implementations and select the optimal one in run-time depending on the size of the input matrix. Moreover, fm4j employs Java (Tm) Concurrency to take advantage of the computation power of multi-cor processors. -
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t2t-pipe
automatic alignment pipeline for parallel treebanks
The *Tree-to-Tree (t2t) Alignment Pipe* is a collection of python scripts, co-ordinating the process of automatic alignment of parallel treebanks from plain text files with a single call from a unix command line. Supported Languages: DE, FR, EN -
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The sequence alignment task in MAGI (magi.ucsd.edu) is based on the miRanda algorithm, but we redesign the miRanda algorithm on GPU by taking its advantages of massively parallel computing and extra high memory bandwidth using using NVIDIA’s Compute Unified Device Architecture (CUDA). The CUDA-miRanda implementation is a fast microRNA target identification algorithm that aligns short nucleotide sequences (i.e., < 32 nucleotides) against longer reference sequences (e.g., 20k nucleotides). It has the ability to report multiple alignments and the corresponding traceback sequences for any given query-reference pair with up to 166x speedup on 4 GPUs compared to regular CPUs.
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ALCHEMY is a genotype calling algorithm for Affymetrix and Illumina products which is not based on clustering methods. Features include explicit handling of reduced heterozygosity due to inbreeding and accurate results with small sample sizes
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GXP is a parallel/distributed shell, plus a parallel task execution engine that runs your Makefile in parallel on distributed machines. Very easy to install (no need to compile. install it on YOUR machine and use it on ALL machines).
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FASTCUDA
Execution of CUDA programs on a Heterogeneous FPGA-based Architecture
FASTCUDA methodology proposes the use of CUDA, a Graphical Processing Unit (GPU) language which exposes parallelism at source code in a FPGA hardware acceleration environment.The FASTCUDA toolset splits, with minimal user intervention, application's code into two parts: one that will be compiled and executed as parallel software in an embedded Multi-core, and another that will be synthesized and implemented with multiple special-purpose accelerators in hardware. -
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gpgmpi
An GPGMP in C++/OpenCL with improved time step algorithm
The need for speed is always a challenge for large-scale stochastic simulation. This software is based on a parallel stochastic simulation algorithm already implemented on Graphics Processing Unit (GPU) for inhomogeneous reaction-drift-diffusion systems. We suggest an improved choice of time step which turns out to be almost 3 or even more times fast with nearly identical accuracy. The software is now completely implemented in C++ and OpenCL which only depends on boost library and GPU vendor’s OpenCL SDK. ... -
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PPSeq: Parallel NGS Analysis
Parallel Processing for Next-Generation Sequencing (NGS) Analysis
...However, along with its rapid development, the data magnitude and analysis complexity for NGS far exceed the capacity and capability of traditional small-scale computing facilities, such as multithreading algorithms on standalone workstations. To address this issue, here we present a solution using the ever-increasing supply of processing power by massive parallel processing (MPP) systems. -
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Parallel Super-Resolution is a multithreaded ImageJ plugin for super-resolution. Super-resolution is an image fusion and reconstruction problem, where an improved resolution image is obtained from several geometrically warped, low resolution images.
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Parallel HRRT Deconvolution is a multithreaded ImageJ plugin for motion correction of PET brain images.
