Search Results for "hpc code analysis" - Page 34
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Showing 1315 open source projects for "hpc code analysis"
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vim‑javascript
Vastly improved Javascript indentation and syntax support in Vim
vim‑javascript is a Vim bundle enhancing JavaScript editing by providing advanced syntax highlighting, indentation, and support for modern JavaScript constructs through enhanced syntax files. Enables some additional syntax highlighting for NGDocs. Requires JSDoc plugin to be enabled as well. You can customize concealing characters, if your font provides the glyph you want, by defining one or more variables. Distributed under the same terms as Vim itself. Vastly improved JavaScript... -
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The VPT2-screened PyVCI program package is a general purpose open-source code for simulating accurate molecular spectra, based upon force field expansions of the potential energy surface in normal mode coordinates. It includes harmonic normal coordinate analysis, vibrational perturbation theory and vibrational configuration interaction (VCI) algorithms, with VCI matrix elements chosen iteratively according to VPT2 energy contributions, across a range of significance thresholds. ...
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Souper
A superoptimizer for LLVM IR
...By leveraging SMT (Satisfiability Modulo Theories) solvers, Souper symbolically analyzes LLVM Intermediate Representation (IR) to synthesize equivalent, more efficient expressions. It identifies peephole optimizations—small instruction-level improvements—that LLVM’s optimizer may overlook, thereby improving compiled code quality. Souper can operate in multiple modes: as a standalone analysis tool that extracts and solves SMT queries from LLVM bitcode, or as an LLVM optimization pass that applies discovered optimizations directly to the IR. It integrates seamlessly with Clang and LLVM tools and supports caching mechanisms (RAM or Redis) to accelerate repeated analyses. ... -
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CSSLint
Automated linting of cascading stylesheets
CSSLint is an open-source CSS code quality tool originally written by Nicholas C. Zakas and Nicole Sullivan. A lint tool performs static analysis of source code and flags patterns that might be errors or otherwise cause problems for the developer. CSSLint is a tool to help point out problems with your CSS code. It does basic syntax checking as well as applying a set of rules to the code that look for problematic patterns or signs of inefficiency. ... -
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Python Machine Learning book
The book code repository and info resource
What you can expect are 400 pages rich in useful material just about everything you need to know to get started with machine learning. From theory to the actual code that you can directly put into action! This is not yet just another "this is how scikit-learn works" book. I aim to explain all the underlying concepts, tell you everything you need to know in terms of best practices and caveats, and we will put those concepts into action mainly using NumPy, scikit-learn, and Theano. This is not... -
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AutoReplacerPlus
Automatic correction of software bugs and grammar mistakes
Automatic correction of software bugs announced in compilers (clang, gcc) / Static Code Analysis tools (cppcheck, FindBugs) and grammar/style errors like in LanguageTool. Usage: use tool (e.g. cppcheck) and store results in a text file. Afterwards call: autoreplacerplus mytextfile -
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luzienseditor
LuziensEditor ist eine kleine IDE für Java, C/C++, und Webentwicklung
LuziensEditor ist eine kleine IDE für Java, C/C++, und Webentwicklung mit einigen Besonderheiten. - Direkter Zugriff auf XAMPP - Eigene Konsole - Syntax highligts - Eigene Versionsverwaltung - Programme als Debian Paket verpacken - ... -
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Asynchwave
image analysis template library
A research project, Asynchwave library is C++ code provided in a set of source C++ files. Its purpose is to provide a comprehensive set of classes and functions for 1.1. General purpose extendable image analysis on image segments of arbitrary shape. The organization is similar to STL: there are algorithms, collections, functional objects, iterators and adaptors. This architecture allows productive and flexible programming while keeping the code as fast as possible. 1.2. ... -
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RNAseq Tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud
rnaseq_tutorial is a tutorial and educational resource created by the Griffith Lab that guides users through the steps of RNA-seq data analysis. It includes working pipelines for alignment, differential expression, alternative splicing, visualization, and interpretation. It is designed to run in the cloud or local environments, providing introductory material on file formats, reference genomes / annotation, QC, mapping, quantifying expression, visualizing results, etc. The version in that... -
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Engine Emissions & Uncertainty Analysis
Internal combustion engine emissions and uncertainty analysis
This is an open source computer code that was designed to conduct emissions calculations and uncertainty analysis from steady-state internal combustion engine experiments. The code is available in LabView and MATLAB. The LabView code does not conduct uncertainty analysis. Only the MATLAB code conducts uncertainty analysis. The LabView code was designed to be integrated into the test cell and be used in real time while the engine is running. -
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MethodCallTrace4Java
Template for AspectJ, by which you can trace back the method call.
$. What it does? When we design our own Java classes, we often depend on the 3rd party Java classes. Sometimes, we need to clarify the relationship among those 3rd party Java classes. And Aspect by AspectJ can shed light on our way. This project is the template for the Aspect by AspectJ. By the pointcut for the method call, we can trace back'who calls it. The word 'who' in this context is: Which method of which class For instance ... By the pointcut for: ... -
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Halstead Metrics Tool
Software Metrics Analyzer for C,C++,Java Programs
Some software measures are still not widely used in industry, despite the fact that they were defined many years ago, and some additional insights might be gained by revisiting them today with the benefit of recent lessons learned about how to analyze their design. This project analyzes the design and definitions of Halstead’s metrics, the set of which is commonly referred to as ‘software science’. This analysis is based on a measurement analysis framework defined to structure, compare,... -
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Density-ratio based clustering
Discovering clusters with varying densities
This site provides the source code of two approaches for density-ratio based clustering, used for discovering clusters with varying densities. One approach is to modify a density-based clustering algorithm to do density-ratio based clustering by using its density estimator to compute density-ratio. The other approach involves rescaling the given dataset only. An existing density-based clustering algorithm, which is applied to the rescaled dataset, can find all clusters with varying... -
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Spark Python Notebooks
Apache Spark & Python (pySpark) tutorials for Big Data Analysis
Spark Python Notebooks is a curated collection of example Jupyter notebooks designed to help developers and data engineers learn Apache Spark using Python in an interactive environment. Rather than only providing static code files, this project uses notebooks to teach practical data processing workflows, exposing users to real Spark programming patterns like working with RDDs, DataFrames, and distributed computations. These notebooks often demonstrate how to transform, analyze, and visualize... -
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BioC
We describe a simple XML format to share text documents and annotation
A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are... -
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Mass-based dissimilarity
A data dependent dissimilarity measure based on mass estimation.
This software calculates the mass-based dissimilarity matrix for data mining algorithms relying on a distance measure. References: Overcoming Key Weaknesses of Distance-based Neighbourhood Methods using a Data Dependent Dissimilarity Measure. KDD 2016 http://dx.doi.org/10.1145/2939672.2939779 The source code, presentation slide and poster are attached under "Files". The presentation video in KDD 2016 is published on https://youtu.be/eotD_-SuEoo . Since this software is licensed... -
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PyVCI
Vibrational configuration interaction code for simulating IR spectra
The PyVCI program package is a general purpose open-source code for simulating accurate molecular spectra, based upon force field expansions of the potential energy surface in normal mode coordinates. It includes harmonic normal coordinate analysis and vibrational configuration interaction (VCI) algorithms, implemented primarily in Python for accessibility but with time-consuming routines written in C. -
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Attitude Estimator
A C++ implementation of a nonlinear 3D IMU fusion algorithm.
...Features of the estimator include gyro bias estimation, transient quick learning, multiple estimation algorithms, tuneable estimator parameters, and near-global stability backed by theoretical analysis. Great emphasis has been placed on having a very efficient, yet totally numerically and algorithmically robust implementation of the filter. The code size has also been kept to a minimum, and has been extremely well-commented. The programmatic interface has also been made as easy as possible. Please refer to the extensive documentation of the library for more information on its capabilities and usage caveats. -
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ooPorter
A Porter stemming or stemmer algorithm coded in ooRexx
This is an ooRexx line-by-line port from Ansi-C to ooRexx of the stemming routine published by Martin Porter 1980. The original source code from Porter has been commented out and emulated by the corresponding (oo)Rexx code as far as possible. This is not an example of good or fast (oo)Rexx programming, it is merely a demonstration of the Porter stemming routine ported to ooRexx, use and modify as necessary. Input to the program is a textfile with words to be stemmed, one per line.... -
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GNomEx
A Genomic LIMS and Data Repository
Our source code is now on GitHub: https://github.com/hci-gnomex/gnomex. Please refer to GitHub for the latest code. GNomEx is Genomic LIMS and Data Repository. It holds annotated experiments and downstream analysis and serves data tracks to popular genome browsers such as IGB, IGV, and UCSC genome browser. The LIMS handles all aspects of the experiment from order through results delivery. -
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CRAFT HPC Floating-point Analysis
CRAFT: Configurable Runtime Analysis for Floating-point Tuning
CRAFT (Configurable Runtime Analysis for Floating-point Tuning) for HPC (High-Performance Computing) uses binary instrumentation to perform runtime analysis of floating-point code, detecting cancellations and making precision level recommendations. NOTE: THIS PROJECT HAS MOVED TO GITHUB!!!! https://github.com/crafthpc/craft -
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Cress Tool Suite
Cress is a comprehensive toolset for graphical service/workflow design
Cress (Communication Representation Employing Systematic Specification) allows graphical description of a wide variety of services such as in data communications/telecommunications, but Cress is not limited to this. The approach allows services to be described graphically as (work)flows of activities. Cress diagrams are automatically translated into formal languages for rigorous analysis and verification, and are also automatically translated into implementation languages for deployment... -
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Data Science Specialization
Course materials for the Data Science Specialization on Coursera
The Data Science Specialization Courses repository is a collection of materials that support the Johns Hopkins University Data Science Specialization on Coursera. It contains the source code and resources used throughout the specialization’s courses, covering a broad range of data science concepts and techniques. The repository is designed as a shared space for code examples, datasets, and instructional materials, helping learners follow along with lectures and assignments. It spans essential topics such as R programming, data cleaning, exploratory data analysis, statistical inference, regression models, machine learning, and practical data science projects. ... -
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CCKDM
Concern Mining
This is a tool for concern mining which uses a KDM model as input and the output is the same model with annotated concerns. It uses a Concern Library and a modified String Clustering K-means algorithm with Levenshtein metric to cluster the strings. -
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Biskit is a python library for structural bioinformatics research. It simplifies the analysis of macromolecular structures, protein complexes, and molecular dynamics trajectories and offers a platform for the rapid integration of external programs. PLEASE NOTE: The Biskit source code as well as any later releases are now hosted on https://github.com/graik/biskit The sourceforge repo is only kept here for reference.
