Search Results for "parallel" - Page 33
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Showing 1481 open source projects for "parallel"
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RPlite
RankProduct implementation for differential expression analysis
...It allows the user to perform meta-analysis of different transcriptomic datasets (with different protocols, platforms, technologies, batch, etc.). This implementation computes both up and down regulations in one pass. It is parallelized (dependency: parallel) and memory-optimized: the user can specify the maximum size of the matrices in memory (parameter size) for the unpaired test. -
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CUDAlign
CUDAlign is a tool that aligns huge DNA sequences in CUDA capable GPUs
...Look at the following papers for detailed information: [1] Edans Sandes, Alba Melo. Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences using GPU. IEEE Transactions on Parallel and Distributed Systems, vol. 99, PrePrints, 2012 [2] Edans Sandes, Alba Melo. Smith-Waterman Alignment of Huge Sequences with GPU in Linear Space. IPDPS 2011: 1199-1211 [3] Edans Sandes, Alba Melo. CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences. PPOPP 2010: 137-146 The latest source code can be found in Github. ... -
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Postgres-XC is a write-scalable synchronous multi-master PostgreSQL cluster with the following features. 1) Both read and write scalability. 2) Configured with more than one server. 3) Complete global transaction and visibility management.
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Dual State Framework
C++ parallel programing framework
This is a framework for making games easier to parallelize. It uses the “Active Objects” paradigm and also two copies of state to allow for non-blocking deterministic parallelism. -
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HpcTemplateLib
HPC Template Library to supplement the STL
This package is intended to provide the user with threadsafe containers and classes for applications in High Performance Computing (HPC) where parallel programming is commonplace. Today’s multi-core computers bring that parallelism into the realm of everyday use. It is important to provide thread safe containers and classes in this environment. The HPC Template Library (HTL) aims to replace certain portions of the STL. It is a merger and rewrite of classes from the STL, QT, Boost, and SigSlots libraries. ... -
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jmpshcmd - smarthome command tool
java based cmd tool to connect different smarthome plattforms
This project is stopped at the moment because of very interesting parallel activities like openhab... ------------- In the smarthome area different systems and technologies can be found. If you want to use only one user interface for all devices you will not find the "right" tool. But there are different automation plattforms like homematic or openhab and often a scripting feature are available. -
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neuranep
Neural Network Engineering Platform
A parallel-programming framework for concurrently running large numbers of small autonomous jobs, or microthreads, across multiple cores in a CPU or CPUs in a cluster. NeuraNEP emulates a distributed processing environment capable of handling millions of microthreads in parallel, for example running neural networks with millions of spiking cells. -
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KM Player Remote
An Android app to remote - control KM Player
A minimalist remote control app made specifically developed for KM Player . To work with you need to Download server for windows here : https://sourceforge.net/projects/kmplayerremote/ Download Android app from here : https://play.google.com/store/apps/details?id=com.mkkhedawat.kmplayerremote -
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mobiQ Lab
Create your own mobile test lab using popular opensource tools
You can create your own mobile testing lab using some of the popular opensource mobile testing tools. A client server approach let you submit tests from anywhere within your network. You can run tests in parallel on multiple devices, access reports and configure devices. The comprehensive reference guide will help you understand MobiQ in depth. Go to Files to download it. -
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The Thot toolkit repository has moved to http://daormar.github.io/thot/ Thot is a toolkit for statistical machine translation. The new Thot toolkit includes fully automatic and interactive machine translation, incremental training of statistical models, parallel estimation, ...
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ProC 3.0
smart Workflow Engine
ProC 3.0 is a scientific workflow engine to build, manage and execute workflows (pipelines) in heterogeneous environments, supporting GRID and other means of parallel processing. It includes a data management component (DMC) to transparently access databases for storage of results and automatically adds metadata to track the processing of data products, so that at every time a full processing history is available. The software was developed and used within the ESA Planck satellite mission. -
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WebRTCBench
A benchmark for WebRTC implementations
WebRTCBench is a benchmark suite to provide quantitative comparison of WebRTC implementations across different browsers and architectures. It also includes a database interface for storing measurement results. The benchmark was developed at the Parallel Architectures and Systems Lab at the University of California Irvine supported by a generous grant from Intel Corporation. -
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PRADA
PRADA : Pipeline for RNA-Sequencing Data Analysis
Massively parallel sequencing of cDNA reverse transcribed from RNA (RNASeq) provides an accurate estimate of the quantity and composition of mRNAs. To characterize the transcriptome through the analysis of RNA-seq data, we developed PRADA. PRADA focuses on the processing and analysis of gene expression estimates, supervised and unsupervised gene fusion identification, and supervised intragenic deletion identification. -
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Eye candy showing parallel Conway's Life games in the bit planes of the screen, using boolean BitBlt operations. (Independently rediscovered algorithm given already in Smalltalk-80 Blue Book, by the inventors of BitBlt.)
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openSEQ
NGS compute distro proloaded with pipeline analysis software
...Software included (location - name): path - biobambam path - bwa path - bowtie2 path - bowtie path - cufflinks path - bcftools path - tophat path - scalpel path - samtools path - sra-toolkit path - bamtools path - delly path - delly-parallel path - picard-tools path - fastahack path - twoBitToFa ~/prog/java/ - mutect ~/prog/python/ - platypus ~/prog/java/ - gatk -
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myopentrader
Open-source complex-event based trading engine
...We have started MOT in 2012 and we have been using MOT ever since successfully. The best way of describing MOT is a flexible open-source trading framework. It is built from ground up as a parallel computing engine, which allows to do large scale parallel backtesting. MOT is distributed under the GPL v3 License and is free to use for everyone without warranty. MyOpenTrader.org is not responsible for any of your trading losses and can not be held accountable. Use the framework at your OWN risk. MOT is written purely in Java (1.6++) and has dependencies on a DB as well as a MQ Broker (such as ActiveMQ). -
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The Mooty Tool Kit (MTK) is a feature-rich Bash tool kit that makes it easy for you to perform High Performance Administration (HPA) task in your environment. HPA task include: * Mass-management of computers * Deployment of files * Collection of system data reports * And much, much more The MTK leverages existing Network Operating System infrastructure, so it is very light, flexible, portable and powerful. The kit comes with multiple tools that make mass management simple and...
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mapgraph
Massively Parallel Graph processing on GPUs -- now part of Blazegraph
Mapgraph is SYSTAP’s disruptive new technology to exploit the main memory bandwidth advantages of GPUs. The early work was co-developed with the University of Utah SCI Institute and has its pedigree in the UINTAH software running on over 750M cores on the TITAN Super Computer. Today, SYSTAP has commercialized this technology into it’s Blazegraph Accelerator and Blazegraph HPC products. Checkout our options for GPU acceleration of graphs or contact us to learn more: ... -
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fPotencia
Power flow library in C++
...After observing the lack of ready-to-implement libraries for power system analisys, and that the existing ones focus on command line workflow, I decided myself to start a project to fill the gap. Since Power system simulations have started needing to be executed in parallel, the old C-like designs are outdated; modular design is now needed to launch many simulations at the same time based on a base circuit. fPotencia is programmed in C++, but my intention is to bring JAVA, C#, Python and perhaps MATLAB versions of it. All of them in native code and whenever possible with the same modular structure. -
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ALOO
Concurrent OOP with Agents
ALOO is an experimental general-purpose programming language integrating objects and agents as first-class abstractions for building concurrent (asynchronous, reactive, parallel, etc) programs. -
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User-union is a set of programs for POSIX/Unix/Linux systems that lets you have "union mounts" without special privilege. The result: change requests in one directory are actually performed in a separate parallel directory instead.
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Java OpenBase
Java all purpose Library
A small library with some day to day problemsolving classes. Database, XML, Parallel, Math, String, ... -
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instantFSM
C++ inline state machine library
instantFSM is a header-only C++ state machine library. Its goal is to make state machine declaration and use easy enough that it can be integrated into your projects painlessly. Have a look atp the wiki where you will find a tutorial, samples, and a cheatsheet to get accustomed with instantFSM. The only instantFSM header file is downloadable from the files section or you can check it out from the git repository. -
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STMX
High-performance transactional memory for Common Lisp
...Instead of traditional lock-based programming, one programs with atomic memory transactions: if a memory transaction returns normally it gets committed, if instead it signals an error (Lisp slang for throwing an exception) it is rolled back. Memory transactions can safely run in parallel in different threads, are re-executed from the beginning in case of conflicts or if consistent reads cannot be guaranteed, and effects of a transaction are not visible from other threads until it commits. STMX gives freedom from deadlocks, automatic rollback on failure, and it aims at resolving the tension between granularity and concurrency. -
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Intel(R) CnC
Parallelism without the Pain
...Through its portabilty and composability (with itself and other tools) it provides future-proof scalability. Intel© Concurrent Collections for C++ is a C++ template library for letting C++ programmers implement CnC applications which run in parallel on shared and distributed memory.
