Search Results for "parallel" - Page 32
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Showing 1481 open source projects for "parallel"
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ViennaWD
Classical and quantum semiconductor device simulation
The ViennaWD package provides a selection of simulation tools supporting classical and quantum approaches for semiconductor device simulation. -
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Python Control Systems Library
Feedback control system analysis and design
The Python Control Systems Library, python-control, is a python module that implements basic operations for analysis and design of feedback control systems. This homepage for this project is at http://python-control.org and the code base in maintained at https://github.com/python-control/python-control. Information on this page is out of date, but left here for posterity. -
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Handy TCP/IP Server/Client Tools
Various TCP/IP servers, clients and network management tools
IPtools is an all in one package that includes various TCP/IP tools. Server: - FTP - TFTP - Syslog - Web - Remote Command - General UDP server - Multicast server Client utilities: - Multicast client - TFTP client Starting on version 0.2.0, a powerful network connection tools UBridge is added, it can bridge: - VXLAN (newly released) - UDP sessions - NIC card of the PC - Connections to Cisco Router Simulator "GNS3/dynamips" and H3C Router Simulator... -
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GPFS Monitor Suite
A suite of tools for monitoring GPFS clusters.
The GPFS Monitor Suite was developed at the National Center for Atmospheric Research (NCAR) to assist with the deployment and operation of the GLADE storage envrionment, which utilizes IBM's General Parallel File System (GPFS). The suite uses perl scripts and Ganglia to provide low impact near real time monitoring of a GPFS multi-cluster environment consisting of 4,700+ Linux systems. This is not a standalone package, some assembly on your part is required! -
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XSS-Scanner
Powerful XSS Scanner based on Selenium Web Driver
...XSS scanner walks through all reachable pages of your web-site and checks all forms that can be potentially vulnerable. XSS-Scanner is a multi-threading app that works in parallel in several browser windows to save time and improve efficiency. After working, it creates a nice web page with a report of a test result. This app is absolutely free XSS Scanner, based on Selenium Web Driver. It scans directly in your browser. All you need is FireFox with FireFoxDriver (usually it is built-in). Here you can find a self-sufficient source, feel free to use and extend it if needed: https://github.com/pashna/XSS-scanner To check vulnerabilities, XSS-scanner uses a list of known XSS-injection provided by owasp: https://www.owasp.org/index.php/XSS_Filter_Evasion_Cheat_Sheet Let's test and keep safe! -
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rascanprint
Emulator based copier scanner and printer
...This library (the DLL), to work with the scanner (the default) through universal TWAIN-driver interface to the OS NT/2000/2003/XP/7/8, is designed for quick scanning without all the dialogues and acknowledgments are sent to the printing of the image and the parallel archiving of all scans in BMP or JPEG. A prerequisite for the development was the need to automate scanning and printing press of a button on the scanner (native software does not support it), due to geographically dispersed scanner and printer in order not to run back and forth, a kind of software emulation of the copier. DLL provides universal access for other applications, regardless of the language in the environment Win ALL. -
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libCudaOptimize
A Parallel Optimization library with CUDA
LibCudaOptimize is a GPU-based open source library that allows you to run state-of-the-art bio-inspired optimization heuristics in parallel to optimize a fitness function, introduce a new optimization algorithm, or easily modify/extend existing ones. -
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Program jobman (Job Manager) glues executables written in different languages according to a given flow. The program can run executables with arguments in parallel (multiprocessed) or in loop or in any combination of them.
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VarScan
Variant detection in next-generation sequencing data
Variant detection in massively parallel sequencing. For one sample, calls SNPs, indels, and consensus genotypes. For tumor-normal pairs, further classifies each variant as Germline, Somatic, or LOH, and also detects somatic copy number changes. THE LATEST VERSION IS AVAILABLE ON GITHUB -
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This project aims to provide bit-parallel based string comparison tools on modern accelerators, as well as on common multi-core CPUs. Fundamentally, these tools are specified for biological data (i.e DNA, RNA sequences), however, they could also be extended to process other types of text data.
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CUDA-Quicksort
CUDA-Quicksort: A GPU-based implementation of the quicksort algorithm
..."Two GPU-based implementations of the quicksort were presented in literature: the GPU-quicksort, a compute-unified device architecture (CUDA) iterative implementation, and the CUDA dynamic parallel (CDP) quicksort, a recursive implementation provided by NVIDIA Corporation."[*]. CUDA-quicksort is an iterative GPU-based implementation of the quicksort algorithm. "Experiments performed on six sorting benchmark distributions show that CUDA-quicksort is up to four times faster than GPU-quicksort and up to three times faster than CDP-quicksort."[*]. ... -
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Parallel
Parallel - Task parallelism in JS
Parallel is a JS library that enables you to run several tasks in parallel and also also take advantage of multi-core CPUs. Benchmarks: http://jsperf.com/parallel -
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jAgg
jAgg - Java Aggregation Operations
jAgg is a Java 5.0 API that supports “group by” operations on Lists of Java objects: aggregate operations such as count, sum, max, min, avg, and many more. It supports Super Aggregation: Rollups, Cube, and Grouping Sets. It supports analytic operations such as lag/lead and row number and more. It also allows custom aggregate and analytic operations. -
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PANET, a Cytoscape plugin is developed to efficiently analyze the robustness-related dynamics and feed-forward/feedback loop structures of biological networks. This is an advanced plugin of NetDS (http://netds.sourceforge.net/). We employed OpenCL library to make the time-consuming parts of NetDS are processed in parallel. Finally, in comparison to the original NetDS, PANET performed large-scale robustness calculation and feed-forward/feedback loop examination faster by several hundred times for a human signaling network with 1609 nodes and 5063 links.
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parSRA
Portable Framework for the Parallel Execution of Short Read Aligners
...It uses the following techniques in order to improve scalability: 1) a fast splitting of the input reads using the FUSE kernel module available in most of current Linux distributions; 2) a balanced on-demand distribution of the reads based on the shared locks of UPC++, an extension of C++ for parallel computing that follows the Partitioned Global Address Space (PGAS) paradigm. parSRA is portable as its configuration file allows the users to parallelize the execution of existing SRA tools without the need to modify the source code of parSRA or the aligner. -
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GTkNN
GPU-based Textual kNN (GT-kNN)
The following code is a parallel kNN implementation that uses GPUs for the high dimensional data in text classification. You can use it to classify documents using kNN or to generate meta-features based on the distances between a query document and its k nearest neigbors -
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Ichnaea
Performance Timing Tools
Ichnaea is a set of tools that aid in collecting and tracking parameters and timings for parallel applications. The Performance Modelling Timing Module, PMTM, is a library that wraps system timing calls to abstract these from code developers and aid portability. It also has functionality to store parameters and print those, along with the timing information to a comma separated variable file. The Performance Modelling Analysis Tool, PMAT, is coming soon. -
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SWAPHI-LS: Alignment on Xeon Phi Cluster
Smith-Waterman long DNA sequence alignment on Xeon Phi clusters
The first parallel Smith-Waterman algorithm exploiting Intel Xeon Phi clusters to accelerate the alignment of long DNA sequences. This algorithm is written in C++ (with a set of SIMD intrinsic extensions), OpenMP and MPI. The performance evaluation revealed that our algorithm achieves very stable performance, and yields a performance of up to 30.1 GCUPS on a single Xeon Phi and up to 111.4 GCUPS on four Xeon Phis sharing a host. -
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JPOP is a pure java parallel optimization package based on the Optimization Java Package. It supports analytical gradients and Hessians for non-linear optimization. JPOP is based on uncmin in Fortran but employs java arrays and object oriented code.
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MPJ Express is an implementation of an MPI-like API—standardized by the Java Grande forum—used to write parallel Java applications, which can execute on a variety of parallel platforms ranging from multicore processors to compute clusters/clouds.
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Distributed Video Transcoding
Distributed Video Transcoding
...Also we want to build this solution on top of CentOS and ffmpeg. So I decided to design and develop "Simple Scalable, Parallel, Multi-bitrate Video Transcoding System" by myself. -
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Agilefant
The scalable open source tool for lean and agile project management
Agilefant is a simple but powerful web based tool for lean and agile project management. It is the most versatile open source solution of its kind today, with a rapidly growing user base of more than 10k users around the world in thousands of organizations. Based on more than ten years of solid scientific research within real world organizations, Agilefant's unique model scales from personal todo-lists to large-scale multi-team development and long-term product and portfolio... -
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COMRAD-MPI
Compression of Large Genomic Datasets using Parallel Computing
COMRAD-MPI is a parallel computing algorithm for reducing the computational time for compressing the large genomic data sets based on COMRAD algorithm. It captures the long range repeat redundancies in large genomes there by providing a way to compress the large DNA data set. Three stages- Substitution, Clean up and Huffman encoding have been parallelized using message passing library. -
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SWAPHI: Smith-Waterman on Intel Xeon Phi
The first protein sequence database search on shared-host Xeon Phis
The first parallel algorithm to accelerate the Smith-Waterman protein database search on shared-host multiple Intel Xeon Phi coprocessors. By searching against the UniProtKB/TrEMBL database, SWAPHI achieves a performance of up to 58.8 billion cell updates per second (GCUPS) on a single Xeon Phi and up to 228.4 GCUPS on four Xeon Phis.
