Showing 1344 open source projects for "parallel"

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  • 1
    Route11

    Route11

    C++ flow-based metaprogramming library

    Route11 is a powerful C++ flow-based metaprogramming library that allows you to create and route complex dataflow systems at compile-time. Route11 uses Template Metaprogramming to construct complex "process systems" defined by static relationships between "process primitives". A process primitive is a generic host class that inherits a "process policy". The process policy defines the specific behavior of a process primitive. The general term: "process" can refer to either one of these...
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  • 2

    HECTOR

    HECTOR is parallel error corrector for 454 datasets

    We present HECTOR, a parallel multistage k-hopo spectrum based homopolymer-length error corrector for 454 sequencing data.
    Downloads: 0 This Week
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  • 3
    MIDI Step Sequencer - Cythar

    MIDI Step Sequencer - Cythar

    Polyphonic MIDI sequencer

    A pattern-oriented, polyphonic MIDI step-sequencer, which makes its own path. 16 parallel patterns with six tracks and 16 bars – equating to 256 bars & 96 tracks. Videos: https://www.youtube.com/watch?v=0UK7US2NwC0&list=PLZCmwv5U3kDP-3jldIzOErbnBOdGjJV_M Source: https://github.com/monotomy/CYTHAR-Sequenzer Check out B-Step Sequencer too: http://b-step.monoplugs.com . A similar, new Project.
    Downloads: 5 This Week
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  • 4

    Fast Matrix for Java

    General purpose matrix utilities for Java in Parallel Computing

    Fast Matrix for Java (fm4j) is a general-purpose matrix utility library for computing with dense matrices. fm4j encapsulated different underlying implementations and select the optimal one in run-time depending on the size of the input matrix. Moreover, fm4j employs Java (Tm) Concurrency to take advantage of the computation power of multi-cor processors.
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  • 5

    t2t-pipe

    automatic alignment pipeline for parallel treebanks

    The *Tree-to-Tree (t2t) Alignment Pipe* is a collection of python scripts, co-ordinating the process of automatic alignment of parallel treebanks from plain text files with a single call from a unix command line. Supported Languages: DE, FR, EN
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  • 6
    The sequence alignment task in MAGI (magi.ucsd.edu) is based on the miRanda algorithm, but we redesign the miRanda algorithm on GPU by taking its advantages of massively parallel computing and extra high memory bandwidth using using NVIDIA’s Compute Unified Device Architecture (CUDA). The CUDA-miRanda implementation is a fast microRNA target identification algorithm that aligns short nucleotide sequences (i.e., < 32 nucleotides) against longer reference sequences (e.g., 20k nucleotides). It has the ability to report multiple alignments and the corresponding traceback sequences for any given query-reference pair with up to 166x speedup on 4 GPUs compared to regular CPUs.
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  • 7
    ALCHEMY is a genotype calling algorithm for Affymetrix and Illumina products which is not based on clustering methods. Features include explicit handling of reduced heterozygosity due to inbreeding and accurate results with small sample sizes
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  • 8
    GXP is a parallel/distributed shell, plus a parallel task execution engine that runs your Makefile in parallel on distributed machines. Very easy to install (no need to compile. install it on YOUR machine and use it on ALL machines).
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  • 9
    Parallel Iterative Deconvolution is a multithreaded ImageJ plugin for iterative image deblurring.
    Downloads: 12 This Week
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  • 10

    FASTCUDA

    Execution of CUDA programs on a Heterogeneous FPGA-based Architecture

    FASTCUDA methodology proposes the use of CUDA, a Graphical Processing Unit (GPU) language which exposes parallelism at source code in a FPGA hardware acceleration environment.The FASTCUDA toolset splits, with minimal user intervention, application's code into two parts: one that will be compiled and executed as parallel software in an embedded Multi-core, and another that will be synthesized and implemented with multiple special-purpose accelerators in hardware.
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  • 11

    PPSeq: Parallel NGS Analysis

    Parallel Processing for Next-Generation Sequencing (NGS) Analysis

    ...However, along with its rapid development, the data magnitude and analysis complexity for NGS far exceed the capacity and capability of traditional small-scale computing facilities, such as multithreading algorithms on standalone workstations. To address this issue, here we present a solution using the ever-increasing supply of processing power by massive parallel processing (MPP) systems.
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  • 12

    gpgmpi

    An GPGMP in C++/OpenCL with improved time step algorithm

    The need for speed is always a challenge for large-scale stochastic simulation. This software is based on a parallel stochastic simulation algorithm already implemented on Graphics Processing Unit (GPU) for inhomogeneous reaction-drift-diffusion systems. We suggest an improved choice of time step which turns out to be almost 3 or even more times fast with nearly identical accuracy. The software is now completely implemented in C++ and OpenCL which only depends on boost library and GPU vendor’s OpenCL SDK. ...
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  • 13
    Parallel Spectral Deconvolution is a multithreaded ImageJ plugin for spectral image deblurring.
    Downloads: 1 This Week
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  • 14
    Parallel HRRT Deconvolution is a multithreaded ImageJ plugin for motion correction of PET brain images.
    Downloads: 0 This Week
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  • 15

    GENIE (GEne-geNe IntEraction)

    GPU based Parallel Gene-Gene Interaction Analysis

    Gene-gene interaction in genetic association studies is computationally intensive when a large number of SNPs are involved. Most of the latest Central Processing Units (CPUs) have multiple cores, whereas Graphics Processing Units (GPUs) also have hundreds of cores and have been recently used to implement faster scientific software. However, currently there are no genetic analysis software packages that allow users to fully utilize the computing power of these multi-core devices for genetic...
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  • 16
    Parallel Super-Resolution is a multithreaded ImageJ plugin for super-resolution. Super-resolution is an image fusion and reconstruction problem, where an improved resolution image is obtained from several geometrically warped, low resolution images.
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  • 17

    grn_inference_multigpu

    This project is a exhaustive search algoritm for multiple GPUs

    ...Among the search algorithms already proposed, there is the exhaustive search where the best feature subset is returned, although its computational complexity is unfeasible in almost all situations. The objective of this work is the development of a low cost parallel solution based on GPU architectures for exhaustive search with a viable cost-benefit. We use CUDA , a general purpose parallel programming platform that allows the usage of NVIDIA GPUs to solve complex problems in an efficient way.
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  • 18

    PCramer

    Dense linear solver utilizing Cramer's rule in parallel

    This code provides a linear solver based on a parallel application of Cramer's rule. The programming was done in 'C' leveraging the MPI-CH2 libraries for message passing between nodes. This implementation is for dense linear systems and all calculations are done with doubles.
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  • 19
    Parallel Realm Alternate Reality 3D
    Downloads: 0 This Week
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  • 20

    Musket - short read error corrector

    a parallel short-read error corrector for Illumina sequencing

    ...Our performance evaluation results, in terms of correction quality and de novo genome assembly measures, reveal that Musket is consistently one of the top performing substitution-error-based correctors. In addition, Musket is multi-threaded using a master-slave model and demonstrates superior parallel scalability compared to all other evaluated correctors as well as a highly competitive overall execution time.
    Downloads: 2 This Week
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  • 21

    xphire

    Cross-company Parallel Half-Identical Region Engine

    XPHIRE (Cross-company Parallel Half-Identical Region Engine) can detect Half-Identical Regions of DNA in CSV-data.
    Downloads: 0 This Week
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  • 22
    Please participate in the SURVEY on rgedit's future: https://www.surveymonkey.com/s/VNMMJMJ your answers are much appreciated! Gedit (Gnome editor, www.gedit.org) plug-in allowing it to become an easy-to-use and yet light-weight IDE for the statistical programming environment, R (www.r-project.org).
    Downloads: 0 This Week
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  • 23
    NetDSpar, a Cytoscape plugin is developed to efficiently analyze the robustness-related dynamics and feed-forward/feedback loop structures of biological networks. This is an improved plugin of NetDS (http://netds.sourceforge.net/). We employed OpenCL library to make the time-consuming parts of NetDS are processed in parallel. Finally, in comparison to the original NetDS, NetDSpar performed large-scale robustness calculation and feed-forward/feedback loop examination faster by several hundred times for a human signaling network with 1609 nodes and 5063 links.
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  • 24
    KISSmenu

    KISSmenu

    KeepItSimple: organize&integrate your tools in a non-/interactive menu

    Do you have dozens of tools with dozens of parameters? KISSmenu helps you to organize them, to integrate them and to run them interactively in a terminal based menu or automatically, e.g. starting it up as a cron job. Development or tooling environment: shortcut based menu of commands, which can be used both interactively and non-interactively. Middleware: simply integrates various software through environment variables. Really simple! A 500 lines long bash script easy to maintain,...
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  • 25
    The parallelized FDTD Schrodinger Solver implements a parallel algorithm for solving the time-independent 3d Schrodinger equation using the finite difference time domain (FDTD) method. See the Hosted Apps > MediaWiki menu item for more information.
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