Search Results for "hpc" - Page 3
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Showing 109 open source projects for "hpc"
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CRAFT HPC Floating-point Analysis
CRAFT: Configurable Runtime Analysis for Floating-point Tuning
CRAFT (Configurable Runtime Analysis for Floating-point Tuning) for HPC (High-Performance Computing) uses binary instrumentation to perform runtime analysis of floating-point code, detecting cancellations and making precision level recommendations. NOTE: THIS PROJECT HAS MOVED TO GITHUB!!!! https://github.com/crafthpc/craft -
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Making the tools of annotation languages, source-to-source code transformation and code generation more useful and accessible to the developers of scientific and engineering software for high-performance computers.
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HpcTemplateLib
HPC Template Library to supplement the STL
This package is intended to provide the user with threadsafe containers and classes for applications in High Performance Computing (HPC) where parallel programming is commonplace. Today’s multi-core computers bring that parallelism into the realm of everyday use. It is important to provide thread safe containers and classes in this environment. The HPC Template Library (HTL) aims to replace certain portions of the STL. It is a merger and rewrite of classes from the STL, QT, Boost, and SigSlots libraries. ... -
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<myJAM/> is a web based monitoring and accounting tool for HPC clusters with pbs-like batch-systems (e.g. Torque or PBSPro).
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mapgraph
Massively Parallel Graph processing on GPUs -- now part of Blazegraph
...The early work was co-developed with the University of Utah SCI Institute and has its pedigree in the UINTAH software running on over 750M cores on the TITAN Super Computer. Today, SYSTAP has commercialized this technology into it’s Blazegraph Accelerator and Blazegraph HPC products. Checkout our options for GPU acceleration of graphs or contact us to learn more: https://www.blazegraph.com/product/gpu-accelerated/. The early work was released under the Apache 2 open source license and is available on here at Sourceforge. This work was (partially) funded by the DARPA XDATA program under AFRL Contract #FA8750-13-C-0002 and DARPA Contract #D14PC00029. -
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Production Environment Tutor
Automatic re-build of your environment on another linux platform
Command line tool that coordinates downloading, recompilation, installation and building of environment modules. The tool is driven by simple INI files that keep track of dependencies between installed applications. Useful for HPC-like environments. -
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virtualbelgium
parallelized micro-simulation of large population
The VirtualBelgium project aims at developing understanding of the evolution of the Belgian population using simulation and considers various aspects of this evolution (demographics, residential choice, activity patterns, mobility, ...). It is based on a validated synthetic population for the country and is intrinsically multi-disciplinary. -
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Debian Unstable/testing alpha.
Pre-Alpha Console distro for high performance Linux computing.
Basic Debian INTEL/AMD HPC console/desktop multi purpose. Linux for software devs/QA and thin laboratory clusters. MIC hardware, NUMA and live network memory and full IPv6 are supported. Final alpha release features: ======== * Usb image * General debian repos * VM optimizations * Hugepages by default * CGROUPs optimized by default * ALSA * Latest Debugging / Baremetal kernels * Full Haswell and MIC support in test * Full optimized python support * Full optimized perl support * Java compliance * IPv6 full stack with IPsets * Multipath storage * Overclocking tools * Student/Developer scripts. ... -
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FBSAT
An efficient analysis pipeline for family-based sequencing
Through our tool a user can perform the whole analysis parallelized on UNIX HPC systems controlled by SGE or PBS automatically. Non-bioinformatics researchers can easily and quickly identify variants that are potentially causing diseases while minimizing false positives and artifacts. -
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XNDiff
X-ray and Neutron powder pattern simulation analysis
Keywords (XNDiff): -SAXS -SANS -absolute units -core (double)shell crystalline nanoparticles -with a parallelepidal shape -particle assemblies -powder and ensemble average -C/C++ -Unix -OpenMP -HPC Cluster Keywords (BatchMultiFit): -simultaneous fits for several SAXS and SANS curves with simulation data from XNDiff -SANS data can be smeared with dq values from experimental data sets or analytical functions -Mathematica console -local and global optimizers (simulated annealing, differential evolution, Nelder-Mead, ...) can be used -range for fit parameters and further constraints between fit parameters -parallelized (typ. 4-8 threads) TODO (BatchMultiFit): -read and use errorbars from experimental data sets -allow different q-ranges for different data sets in the fits -rewrite and test in Python using e.g. the lmfit module: https://pypi.python.org/pypi/lmfit/ to get rid of Mathematica and to run it on HPC clusters -
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LaunchMON is a software infrastructure that enables HPC run-time tools to co-locate tool daemons with a parallel job. Its API allows a tool to identify all the remote processes of a job and to scalably launch daemons into the relevant nodes.
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mdtest is an MPI-coordinated metadata benchmark test that performs open/stat/close operations on files and directories and then reports the performance.
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CANPRIC, Modern ANPR SDK Engine
ANPR SDK
...Simplest API The smallest, simplest, fastest Modern ANPR SDK CANPRIC is a modern ANPR/LPR engine, which based on machine learning and high performance computing(HPC). The ambition of CANPRIC is leading the ANPR industry into intelligent times and using the HPC technique to get high speed of processing. -
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Kepler Monitoring
Kepler is a monitoring system for HPC clusters
Kepler is a monitoring system for HPC clusters : it allows users to monitor cluster elements like nodes, network devices and storage nodes. Analyse can be centered on jobs to determine performances and behaviours. -
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NOTE: UBMoD is no longer actively developed and we encourage you to download Open XDMoD as a replacement for UBMoD. Open XDMoD has been developed to provide detailed information on resource utilization and performance for academic and industrial HPC centers. More information is available at http://xdmod.sourceforge.net/ UBMoD is a data warehouse and web portal for mining statistical data from resource managers in high-performance computing environments. UBMoD presents resource utilization over set time periods and provides detailed interactive charts, graphs, and tables.
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tuda-rsync_install
install method for cluster compute nodes
Tuda-rsync_install is a initrd image containing scripts to partition and rsync a rootfs to compute, or other nodes. A fast, easy and flexible solution not only for HPC systems, although it has been developed for that purpose. -
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Comparison of Energy Efficiency between a Desktop Grid System (BOINC) and a HPC Cluster System (Mogon) This is a thesis written at the Universität Paderborn, Germany -Gokul Krishnan
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SprezzOS
SprezzOS -- Linux for the discerning power user.
SprezzOS Linux seeks to provide the premier experience for power users, HPC junkies, cluster administrators and anyone else for whom Debian Unstable is insufficiently hardcore. -
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Fault Tolerance Interface
Fault Tolerance Interface for Large Supercomputers
FTI is an open source library for fast checkpointing in large scale high performance computing systems. UPDATE: We have moved to GitHub, please visit https://github.com/leobago/fti -
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Dress Up RNA seq
End-to-end automated pipeline of RNA seq packages for an HPC system
The purpose of DressUp is to create an end-to-end RNA seq pipeline in which all of the steps of analyzing data from an Illumina sequencer is done in one step in an HPC environment. RNA seq programs included are TopHat, CuffLinks, CuffDiff, CuffMerge, FastQC, and trimming using the FastX toolkit. DressUp facilitates RNA seq programs by streamlining various packages into a single script. That script executes the RNA seq programs on a batch cluster system. Upon execution of the script, jobs are submitted to the cluster depending on attributes set up in the configuration file. ... -
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NUDA (= Nemerle Unified Device Architecture) is a set of extensions for Nemerle programming language to facilitate GPU programming and writing HPC applications. Its main purpose is to experiment with extensible languages for HPC applications
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minder
Monitoring your infrastructure for free.
This software presents a flexible and configurable proposal for monitoring and management of real and virtual HPC infrastructures, compatible with paradigm of cloud computing. We help you to answer: 1) What is the performance of my resources? 2) What equipment and resources do we have already? 3) What do we need to upgrade or repair? 4) What can we consolidate to reduce complexity or reduce energy use? 5) What resources would be better reused somewhere else? -
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Eden is a script-based tool to simplify the process of running large numbers of similar jobs on multiple processors--whether it's a single laptop with four cores or a HPC large shared memory machine with 1024 cores and a job scheduler. The development of Eden was supported primarily by the Office of Cyber Infrastructure of the NSF under Award Number ARRA-NSF-OCI-0906324 for NICS-RDAV center and NSF-OCI-1136246 for support of undergraduate research in the NICS-RDAV center.
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hpc-sjm
Simple Job Manager
SJM is a tool for managing jobs running on a compute cluster with a job scheduler such as Sun Grid Engine or Platform LSF. Use it to manage dependencies between jobs, monitor job completion status, restart failed jobs without rerunning jobs that finished successfully, and more! -
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Cleo cluster batch system
Smart extendable batch manager + scheduler for HPC
Cleo is written on perl5 and works on Linux and hopely on most UNIXes. This is the batch system for computational clusters, which supports possibly most parallel envinronments.
