Search Results for "data structure" - Page 28
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Showing 991 open source projects for "data structure"
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NanoCap
Carbon Fullerene and Capped Nanotube Generator
NanoCap is a generic application for the construction of low energy fullerene and capped nanotube structures. It provides an ideal tool to accompany the study of finite carbon molecules using computer simulation. The implementation involves a standalone application which includes a GUI and allows for dynamic visual inspection through 3D rendering. In addition, the NanoCap core libraries can be used in custom Python scripts that enabled the user to produce structures in bulk or to include the... -
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Directory Structure To Json
Folder Structure >>> JSON File
Just select any folder from your computer and save equivalent JSON file. -
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BiomeNet
BAYESIAN INFERENCE OF METABOLIC DIVERGENCE AMONG MICROBIAL COMMUNITIES
Metagenomics yields enormous numbers of microbial sequences that can be assigned a metabolic function. Using such data to infer community-level metabolic divergence is hindered by the lack of a suitable statistical framework. Here, we describe a novel hierarchical Bayesian model, called BiomeNet (Bayesian inference of metabolic networks), for inferring differential prevalence of metabolic networks among microbial communities. To infer the structure of community-level metabolic interactions, BiomeNet applies a mixed-membership modelling framework to enzyme abundance information. ... -
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xPyder PyMOL Plugin
Analyze and visualize coupled residues and their networks in proteins
xPyder is a PyMOL plugin to analyze and visualize on the 3D structure dynamical cross-correlation matrices (DCCM), linear mutual information (LMI), communication propensities (CP), intra- and inter-molecular interactions (e.g. PSN), and more, to produce highly customizable publication-quality images. xPyder identifies networks (using concepts from graph theory, such as hubs and shortest path searching), compares matrices and focuses the analysis on relevant information by filtering the data using a modular, user-expandable plugin system that takes advantage of structural and dynamical information, contributing to bridge the gap between dynamical and mechanical properties at the molecular level. -
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Responsive HTML Email Template
Responsive HTML email template designed to work on all email platforms
This template is designed to work on all major email platforms. It is built with media query, making it responsive for smartphones that support media queries. It serves as a foundation that has been tested and thoroughly reviewed for compatibility, making it very easy to customize and make changes. Using MailChimp's html email template (blue-print) as the foundation, this template is an improved version with more row options, redefined structure, and many fixes for Outlook, Yahoo, Hotmail,... -
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ReArch Database Project
Code Repository for the Recursive Relational Archaeological DBMS
The Recursive Relational Archaeological Database (ReArch) is a data management platform that preserves the practical configuration that data tables provide, while relaxing the strict, attribute-based model that so characterized modern databases. The schema consists of an inherently recursive and extensible structure that can incorporate heterogeneous observations and analyses into a common framework in order to evaluate their commensurability. -
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ViralNet is an open-source software package for inferring the Clonal Structure of Viral Populations from Time Series Sequencing. The program aims to characterize and quantify the composition, the abundance and the evolutionary history of the underlying viral population within a given host by analyzing Next Generation Sequencing data. ViralNet takes as input the collection of reads (or several collections of reads in case of many data samples or daily data) and the reference genome and it constructs the evolutionary network exhibiting the species abundance profile and the list of haplotypes along with their prevalence.
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adLIMS
adLIMS: a Laboratory Information Management System with ADempiere
...Our laboratory exploits PCR techniques and next-generation sequencing (NGS) methods, to perform high-throughput integration site monitoring in different clinical trials and scientific projects, based on the delivery of therapeutic genes by viral vectors integrating into the genome of target cells. We process around 1500 samples/year resulting in hundreds of millions of sequencing reads, requiring automation and posing new challenges in data storage, monitoring of sample process and computational tools for analyses. Thus we need to standardize data management and tracking systems, built on a scalable, flexible structure with an easily accessible and web based interface, what is usually called Laboratory Information Management System (LIMS). -
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XanLib is a Linux library which provides data structures like hash tables, lists, pipes etc.. Each data structure exposes both synchronized and not synchronized methods.
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...Basically each scenario consists of a database Production (BDP) large volume that simulates a real environment and a database of Experiments (BDE) that contains information about SQL, Mutants and results of experiments with random instruction methods. The reference value is nothing more than a set of data bases. The first scenario has the structure and the generated data for the specific benchmark, the second is its structure and data obtained from an actual application.
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xmlbuilder-js
An XML builder for node.js
XMLBuilder‑JS provides a fluent API for building XML in Node.js. You can create elemental structures via method chaining or object literals, include comments, attributes, and streams. It’s the baseline implementation, with xmlbuilder2 available now for modern DOM compliance, namespace handling, and format conversion. -
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Importer library to import assets from different common 3D file formats such as Collada, Blend, Obj, X, 3DS, LWO, MD5, MD2, MD3, MDL, MS3D and a lot of other formats. The data is stored in an own in-memory data-format, which can be easily processed. www.open3mod.com/ is a 3D model viewer and exporter based on Assimp that is also Open Source.
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XML Content Provider
Plugin to connect XML data sources to the GIN Server
The GIN Server is a semantic middleware for efficient "bottom-up" data integration and automized semantic analysis for dynamically linked data. The XML Content Provider is a configurable plugin for the GIN Server to integrate any XML data source with a simple structure. -
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EJS
Embedded JavaScript templates for node
...While it doesn’t impose a rigid structure (you’re free to organize templates however you like), it works reliably and is simple to adopt. -
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EmulMultiFit
Simultaneously fit SAS data with polydisperse core-shell-shell spheres
...hard sphere structure factor can be used, too -long computation times (depending on problem size and amount of constraints) from hours to a few days are possible -non-parallelized code -
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Orbus MVC
A fast and easy PHP MVC framework
This project aims to create a simple and useful MVC structure for rapid development of aplications in PHP. The second goal is to provide a solid layout to improve the user interface too. For while, only in Portuguese (BR). Please send questions to magno.mabreu@gmail.com -
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DDMsuite
Derivative Difference Minimization Program
DDM program is designed for crystal structure analysis from powder diffraction data by making use of either Rietveld or Derivative Difference Minimization (DDM) method. In the DDM method the refinement is aimed not at minimizing the absolute difference between the experimental and calculated profiles but at minimizing the oscillations (or curvature) of the difference curve. -
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StabLe
An algorithm for learning stable graphical models from data
Stable Graphical Model Learning (StabLe) is an algorithm for learning the structure and parameters of stable graphical (SG) models from data. Stable random variables are motivated by the central limit theorem for densities with (potentially) unbounded variance and can be thought of as natural generalizations of the Gaussian distribution to skewed and heavy-tailed phenomenon. SG models are multi-variate stable distributions that represent Bayesian networks whose edges encode linear dependencies amongst random variables. ... -
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Symmetrical Mulitple Databace - Non center, auto spliting, auto backup, auto error recover, data storage and calculation distribute. For large scale web site storage and calculation. Small Server - Simply multiply thread socket server. Nodes are some servers or hosts with fixed ip-port pairs. Nodes are configed with several known friends. Every node maintains a hash table-rbtree data structure that contains the node map information.
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AWclust is easy to use non-parametric population structure analysis software written for R with a GUI interface. Just point and click and you will be on your way to discovering the important cluster information in your SNP data sets.
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Calculates Natural Product(NP)-likeness of a molecule, i.e. the similarity of the molecule to the structure space covered by known natural products. NP-likeness is a useful criterion to screen compound libraries and to design new lead compounds. Maven dependancy: <dependency> <groupId>uk.ac.ebi.cheminformatics</groupId> <artifactId>NP-Likeness</artifactId> <version>2.1</version> </dependency> Required repository: <repositories> ...
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ProximityForest
Efficient Approximate Nearest Neighbors for General Metric Spaces
A proximity forest is a data structure that allows for efficient computation of approximate nearest neighbors of arbitrary data elements in a metric space. See: O'Hara and Draper, "Are You Using the Right Approximate Nearest Neighbor Algorithm?", WACV 2013 (best student paper award). One application of a ProximityForest is given in the following CVPR publication: Stephen O'Hara and Bruce A. -
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Multi-Column Row Comparator
Provides multi-column sort capabilities for row-based text file data
...The compare method assumes String arguments which are tokenized. These tokens represent the individual columns that are to be sorted based on rules that are injected prior to execution. The data structure of the file is also defined prior to execution. This implementation sorts the following column data types: - java.lang.String - java.Math.BigInteger - java.Math.BigDecimal - org.joda.time.DateTime Columns are sorted based on specified attributes, some of which are type specific. For example: - Treat Null as Low Sort Order (boolean) - Ascending Order (boolean) - DateTime Pattern (String) - BigDecimal Scale (integer) ... and others -
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q pipeline manager
q: integrated platform for pipeline configuration and management
The q utility is a platform for creating and managing data analysis pipelines. It expands the value of your existing job scheduler - either Grid Engine or TORQUE PBS - through numerous functions that help you organize, submit, monitor, manage and share your informatics work. Data processing pipelines require high-level organization and parallelization of work to optimize resource utilization and decrease the time to results. q (from queue) allows complex job sequences to be efficiently... -
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allink
Software for data analysis, image processing, simulations, solver.
Collection of utilities based on two basics classes: Matematica and VarData. Matematica) performs math operations on vectors and matrices for smoothing, interpolation, convolution, image processing... VarData) manipulate a structure of points connected by links. Addraw) openGL engine. ElPoly) analyze mechanical properties of polymer and membrane like structures. Addyn) perform molecular dynamics and Monte Carlo simulations and has a solver for 4th oder PDE. Avvis) perform all the operation of Matematica on different sets of data visualized on a Qt graphical interface. ...
