Search Results for "algorithm" - Page 23
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Showing 1986 open source projects for "algorithm"
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karkinos
Tumor genotyper for Exome sequence that detects SNV,CNV, aTumor purity
karkinos is tumor genotyper which detects single nucleotide variation (SNV), integer copy number variation (CNV) and calculates tumor cellularity from tumor-normal paired sequencing data. Accurate CNV calling is achieved using continuous wavelet analysis and multi-state HMM, while SNV call is adjusted by tumor cellularity and filtered by heuristic filtering algorithm and Fisher Test. Also, Noise calls in low depth region are removed using EM algorithm. -
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mergepbx
script for merging XCode project files in git
Tracking a Xcode project in a version control system is annoying. Simply adding files can lead to merge conflicts that have to be solved manually, although it would be possible to resolve the conflict automatically if the merge algorithm would be aware of the structure of Xcode's project file. After long and annoying merge sessions in one of my projects, I came to the conclusion, that writing a merge driver for git which understands the structure of the project file would be a worthwhile... -
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RAtom
solves nonlinear Kohn-Sham equation for the neutral atom.
RAtom solves nonlinear Kohn-Sham equation for the neutral atom. The adaptive algorithm based on finite element method (FEM) is implemented. Discretization of the differential eigenvalue problem is done by finite element method with Lobatto polynomials as a basis functions. High order Gauss quadratures are applied in order to obtain the total energy of atom with absolut accuracy of 1E-6 hartree. Disctretization leads to generalized eigenvalue problem, which is solved by procedures from... -
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... the calculations involved in each step. The output of PAVT has been structured to maximize the learning outcomes and contains important constructs like FIRST and FOLLOW sets, item sets, parsing table, parse tree and leftmost or rightmost derivation depending on the algorithm being visualized. For instructions to use, see readme.txt.
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... file size. 4. Support iphone,ipod multimedia file formats. 5. Picture converting supports Zoom,Rotate/Flip,tags. 6. DVD Ripper. 7. Supports 69 languages. What's new in this version: Version 4.0: 1 Added HEVC(H265) codec in MP4,MKV; 2 Improved the algorithm of default bitrate; 3 AVC,HEVC,DIVX support codec CRF mode; 4 Updated some codecs and decodecs to latest version.
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RSchr-5
Solves one-electron Schrödinger equation, with SLEPc and PETSc
RSchr-5 calculates the smallest eigenvalues of the one-electron Schrödinger equation. The solved problem is defined on the finite domain, which is a box. The problem is solved with the zero Dirichlet boundary conditions. The implemented algorithm uses Finite Element Method with B-splines as basis functions. Disctretization leads to generalized eigenvalue problem. Program RSchr-5 solves the generalized eigenvalue problem by algorithms implemented in SLEPc amd PETSc libraries. It uses... -
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nunn
This is an implementation of a machine learning library in C++17
nunn is a collection of ML algorithms and related examples written in modern C++17. -
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Raman baseline
Raman baseline correction algorithm for biological samples
Raman baseline correction algorithm specifically designed with the needs of in vivo Raman spectroscopy in mind. It handles irregularly shaped, strong fluorescent baselines and works fine with very low signal to noise ratio. -
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SmartRoot
Semi-automated root image analysis software
SmartRoot is a semi-automated image analysis software which streamlines the quantification of root growth and architecture for complex root systems. The software combines a vectorial representation of root objects with a powerful tracing algorithm which accommodates to a wide range of image source and quality. The software supports a sampling-based analysis of root system images, in which detailed information is collected on a limited number of roots selected by the user according... -
Turn Your Content into Interactive Magic - For FreeTransform anything you share into an engaging digital experience - for free. Instantly convert your PDFs, slides, and files into dynamic, interactive sessions with built-in collaboration tools, activities, and real-time assessment. From teaching to training to team building, make every presentation unforgettable. Used by millions for education, business, and professional development.
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... metrics, which we have shown are important for optimizing the performance of this new approach. Please refer to our paper for details of the algorithm: Dazhi Jiao, Wontack Han and Yuzhen Ye. Functional association prediction by community profiling. Methods, 2017
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yaed
Fast Ellipse Detection
Real Time Ellipse Detection Algorithm. Reference paper: Michele Fornaciari, Andrea Prati, Rita Cucchiara, "A fast and effective ellipse detector for embedded vision applications", Pattern Recognition, 2014 (http://www.sciencedirect.com/science/article/pii/S0031320314001976) -
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ingap-cdg
codon-based de Bruijn graph algorithm for gene construction
Currently, most gene prediction methods detect coding sequences (CDSs) from transcriptome assembly when lacking of closely related reference genomes. However, these methods are of limited application due to highly fragmented transcripts and extensive assembly errors, which may lead to redundant or false CDS predictions. Here we present a novel algorithm, inGAP-CDG, for effective construction of full-length and non-redundant CDSs from unassembled transcriptomes. inGAP-CDG achieves... -
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LeapFrog Optimizer
Open Source Optimizing Algorithm Written in Python
name: leap frog optimizer version: 0.5 ALPHA author: Mark Redd email: redddogjr@gmail.com written for python version: 2 optimizer algorithm website: http://www.r3eda.com/ about: This optimizer was written based on the algorithm published by Dr. R. Russell Rhinehart. A full explanation of the algorithm can be found at the following URL: http://www.r3eda.com/leapfrogging-optimization-algorithm/ The following are "key references" published... -
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NiceShaper - Dynamic Traffic Shaper
NiceShaper provides dynamic traffic shaping for Linux router
NiceShaper is the program developed for Linux router environment. It works in user space on top of standard Linux QOS implementation and iptables. By default, a proven HTB algorithm is used for the root, inner, and leaf classes, SFQ packets scheduling algorithm is the default queuing discipline (qdisc) contained within each of leaf classes, U32 and FW are used as the packets classifiers. NiceShaper provides dynamic traffic shaping approach which is more effective than traditional shaping... -
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This program presents `DIABDIAG', helps to classify the patients with diabetes of T2DM in two types, who are asymptomatic and symptomatic. DIABDIAG uses the principle of Diagnosis Algorithm to sort patients asymptomatic and symptomatic. The classification of two types is used main and sub-main factors that can help to decide under which type the patients should be. DIABDIAG uses as I mention Diagnosis Algorithm by asking users to enter and answer some question then it gives them the result...
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The min cost is a program which is going to find the minimum cost or path of any given numbers. if you have a certain set of numbers this program is going to calculate the optimized cost for that set. Similarly, the program can perform Dijkstra's algorithm which is an algorithm for finding the shortest paths between nodes in a graph by simply insert the node distance in the input file and output the shortest path in output file. The program was written in C++ using a main algorithm of a heap...
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An implementation of the Joint Generation Algorithm of Fredman and Khachiyan for the computation of a dual pair of monotone boolean formulas in DNF (hypergraph transversals, extreme rays of polyhedral cones...). User-replaceable oracle.
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TrackingExample
This project presents simple marker detection and 3D augmentation
... different methods: -Direct Linear Transform, -basic OpenCV algorithm -OpenCV RANSAC based algorithm -OpenCV Least-Median based algorithm. During the tracking it is possible to change the camera settings in real time (brightness, contrast, hue and saturation as well as the camera resolution). The program detects the marker basing on the blob hue, minimal saturation and brightness (called value in HSV color space) as well as the palette maximal brightness. -
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TEAENCRYPTION
A TEA encryption with GUI for 32-bit 64-bit works only on windows.
A algorithm encryption based on TEA (Tiny encryption Algorithm) that will help the user to encrypt his text files and decrypt whenever the user wants as long as he uses the same key.It is simple to use but doesnt work with really really long text files.Will implement mac and other OS in the future. -
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EECE350 Huffman Coding
Huffman Coding Description
The Huffman Coding is used for compressing files and reducing the size of data. The algorithm assign different type of data to to binary representation. The length of a binary number depends on a frequency of this data appears in the file. If it appears often, the binary representation wil contain less bits and vice versa. -
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Ncrypt
Text and image encryption and decryption software
This software provides a mean for users to encrypt and decrypt data in the form of text and images. The program follows a basic encryption algorithm that relies on mathematical properties of matrices, such as row operations, matrix multiplication, and invertible matrices . This program works by allowing the user to input a key in the form of a matrix, on which the program bases the encryption. The program then performs the encryption. The software only works in the scope of text files... -
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Of Mages and Magic
A Simple RPG fighting game for teaching Python
Of Mages and Magic is an RPG based fighting game which may be used to teach simple programming concepts. Students write artificial intelligences which hook into the main Of Mages and Magic executable. These mages can be organised into teams which fight each other until only one team remains. The game is currently in early alpha, meaning some aspects of the interface are a bit clunky. However, in its current iteration, it is fairly suitable for teaching. Any and all feedback would be... -
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CQU
Decision solver for Counting Quantifiers over Unary Predicates
..., and inherit from it. Given a CQUSAT instance in normal form as input, the program returns a solution, if there is one. The implemented method employs dual Simplex Algorithm with Column Generation. At each iteration, a SAT instance is generated and a SAT Solver (minisat) decides its satisfiability. Details about CQUSAT, its normal form and this turing reduction can be found in the paper "CQUSAT.pdf" that comes with this package. For more information, see the README file. -
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text replace case insensitive c# vb.net
.NET replace text case insensitive
Fast algorithm text (string) replace case insensitive writing in .NET. Increase the performance of your application! -
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Parallel MILC
Parallel decompression for the MILC algorithm
The MILC compression has been developed specifically for medical images and proven to be effective. This algorithm is a parallel version for the decompression phase, meant to exploit the parallel computing potential of the modern hardware. Developed with OpenCL framework (version 1.2), runs on CPU and GPU OpenCL devices.
