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Search and export numerics from any text/ascii file. Data sets (scalar, vector, matrix) are given unique names, based on file content. Results can be generated for Matlab, IDL, Scilab, Octave, XML, HTML A wrapper exists for direct usage from Matlab.
Projeny (Probablistic Networks Generator in Java) is a graphical (Java SWT) front-end to BNT (Bayes Net Toolbox for Matlab). Projeny requires BNT, JMatLink and a Matlab back-end. There is no installable release package, but source code is available on SVN - please check out from SVN to use Projeny. Projeny was started with BNJ as the base.
SPM Plugin to estimate point of gaze from fMRI data (eyetracking)
FMR Eyetrack is a SPM plugin that allows to directly estimate the point of gaze from the functional MRI data without the help of a dedicated eye tracker.
I am no longer working in this field. If anyone wants to pick up this project, please contact me.
Decima is a database that was designed to support time-series datamining. It consists of PostgreSQL custom type definition, implementation of GiST index for that type and snowflake database schema.
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PMML-compliant scoring engine and analytic toolkit
...The new project page is augustus.googlecode.com. New releases of the project are not currently being released to sourceforge.
Augustus is designed for statistical and datamining models and produces and consumes models with 10,000s of segments.
Versions of Augustus support PMML 3, 4.0.1, and 4.1.
Facilitates datamining/natural language processing experiments to be executed on weblogs, such as classification, clustering and rating. As part of these experiments, it is possible to apply Latent Semantic Analysis.
JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
The ProM Import Framework allows to extract process enactment event logs from a set of information systems. These can be exported in the MXML format, which is the standard event log data format for Process Mining analysis techniques.
Axon Library (libaxon) is an Open Source, cross-platform, C++ library for reading files in Axon Binary Format. Currently only ABF2 is supported. Additionally, project include binders for Python and Matlab.
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While resting-state fMRI is drawing more and more attention, there has not been a software for its data analysis. Based on MATLAB, we developed a package named REST. Currently REST has three main functions: function connectivity, ReHo and ALFF.
Fireworx is a collection of MATLAB functions that reads and processes data from the FIRe fluorometer made by Satlantic Inc. It serves as a tool for oceanographic, aquatic and land-based research.
BF-2PkA is an algorithm for anonymization of sequence data.
It transforms a dataset in a k-anonymous dataset. Moreover, the sequential pattern mining results are preserved very well.
JStatCom is a software framework that facilitates the creation of JAVA programs for data based analysis tasks in various domains. It provides ways to call routines from specialized software packages, like Matlab, Gauss, Ox, and possibly others.
Implematation of robust depth-based inference tools for microarray data (a scale curve, to measure the dispersion of a set of curves, a rank test to decide if two groups of curves come from the same population, and classification techniques).
A library providing easy, flexible, and efficient read/write access to video files using a wide variety of codecs in MATLAB on Windows and GNU/Linux platforms, using DirectShow and ffmpeg backends, respectively. Also provided are 'load' and 'imread' for bulk reading.
Franklin Math is an open source Java symbolic computer algebra system (CAS), with similarities to commercial math packages such as MATLAB or Mathematica. It allows numeric and symbolic calculations, with built-in functions including plotting commands.
Dataset Retrieval through Intelligent Agents (DARIA): is an Open Source project for facilitating the construction of ARFF data set files for use with WEKA or any such Machine Learning/DataMining Software through the use of Intelligent Agents.
The Fiber project seeks to create a modular open source text mining tool that provides a contextual foundation for analysis in the dissemination of large quantities of text data.
Vademecum is a DataMining suite with a novel help function, semi-automated protocol, consequently modular construction that is also equipped with the most elaborated DataMining methods.
Yapso (Yet Another Plotting System for Octave) is a plotting module for GNU Octave and an alternative to gnuplot. It is intended to be compatible with Matlab plotting commands.
This project aims to create a method able to determine the most frequent word phrases in a large source of text data (>5 Gb) using the computational power of multiple processors.