Search Results for "simulations" - Page 12
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Showing 583 open source projects for "simulations"
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SFS_CODE (Selection on Finite Sites under COmplex Demographic Events) performs forward population genetic simulations under a general Wright-Fisher model with arbitrary demographic, selective, and mutational effects.
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AMBER10_Brownian_Dynamics
Designed for coarse-grained protein association simulations
Based on source code of SANDER from AMBER10, Cheung group (https://mynsm.uh.edu/wiki/projects/cheunggroup/) from University of Houston has been continuously making efforts for molecular simulations of coarse-grained protein models. The code is now released for promoting research in protein-protein association simulations. The code includes additional Hamiltonian terms for the coarse-grained model (as described in http://www.pnas.org/content/110/51/20545.abstract) and uses the algorithm developed by Northup-Allison-Mccammon. ... -
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Polaris CFD
Aerodynamics simulations based on gas kinetics
Polaris CFD is a complete CFD software suite for Aerodynamics simulations created by Alta Dynamics. It is validated to provided accurate results for both internal and external flow problems. Its viewer is built on ParaView for pre and post processing. -
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Lagrangian Dynamics NF Sims
Articulated-body simulation engine written in C
Articulated-body simulation engine written in C: based on the Lagrangian Dynamics, even if on a modified flavour of it, I deviced to make it more friendly in the context of numerical simulations. The overall simulation procedure (de facto a full 3D, an articulated-body simulaiton engine) is called: "Lagrangian Dynamics' New Flavour Simulations". It is delivered through sample-simulators relying on it. The modified falvour of the Lagrangian Dynamics here proposed is also a bit simpler to use and to understand than the original one. ... -
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APL@Voro
APL@Voro a tool for model bilayer simulation analysis.
APL@Voro is a program designed to aid in the analysis of lipid bilayer simulations carried out by gromacs. It calculates the area per lipid and the membrane thickness even for mixed bilayers. Colored Voronoi diagrams and different types of plots are presented in an interactive environment. -
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Train Signalling Simulation
A railway signalling simulation game
"Train Signalling Simulation" (TS2) is a railway simulation game where you have to dispatch trains across an area and keep them on schedule. -
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The Butterfly Effect
Physics Game like "The Incredible Machine"
An open source game that uses realistic physics simulations to combine lots of simple mechanical elements to achieve a simple goal in the most complex way possible. -
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EDM Calibration Baseline Fitting
EDMFit is an adjustment tool to estimate EDM calibration parameters.
...The parameters are checked for significance, to avoid an overestimation. Based on two classical hypothesis testing, EDMFit provides a reliable outlier detection. For uncertainties budgeting, EDMFit makes use of Monte-Carlo simulations and supports different distribution function: - Uniform distribution, - Triangular distribution and - Gaussian (normal) distribution. For refractive index determination, the application supports the following models: - Barrel and Sears (1939), - Edlen (1953, 1966), - Owens (1967), - IAG (1999) and - Ciddor (1996, 2002). ... -
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Analysis software for Nbody/SPH or SPH simulations (e.g. performed with Gadget II). See http://sourceforge.net/apps/wordpress/hyplot/about and http://sourceforge.net/apps/trac/hyplot/wiki for more information.
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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Jasper Protocol Simulator
Jasper supports interactive and graphical simulation of protocols
This protocol simulator provides the capability for interactively and graphically simulating a wide variety of communications protocols. Simulations of various well-known protocols are pre-defined, and the range of protocols can be extended through programming. The simulator is written in Java, and so can be used on nearly any platform with a web browser and/or a Java environment. -
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ViennaWD
Classical and quantum semiconductor device simulation
The ViennaWD package provides a selection of simulation tools supporting classical and quantum approaches for semiconductor device simulation. -
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Quantum walk library
Toolkit for simulations of quantum walks on graphs
Quantum walk library is set of tools for simulations of quantum walks (for chiral or achiral particles) on graphs based on Zarja library. -
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ASEP simulation library
Simulation library for SSEP, ASEP or TASEP simulations
ASEP simulation library is specialized for simulations of Asymmetric Simple Exclusion Processes (ASEP) and its mutations like SSEP or TASEP based on a graph. It is consisted of agents, models, timers and graphs that forms united modelling enviroment ready for computer cluster use - all based on Zarja library. -
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StochPy - Stochastistic modeling in Python - is an easy-to-use package, which provides several stochastic simulation algorithms and unique analysis techniques, which can be used for stochastic simulations of biochemical systems.
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PNGwriter
Easy plotting of images pixel by pixel!
Frustrated because you want to output a high-quality image from your C++ program but haven't found an easy, direct and fast way? Try PNGwriter. Written with scientific simulations in mind, PNGwriter allows you to plot to a PNG image pixel by pixel. * * *README* * * This is the last PNGwriter release that will be hosted on SourceForge.net. Please use the following site: https://github.com/pngwriter/pngwriter/releases to find all versions of PNGwriter including and later than 0.5.5. The PNGwriter website is still hosted on SourceForge.net: http://pngwriter.sourceforge.net Thank you! ... -
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Fluid Gravity 3way
there are 3 observers to every curve, each seeing the other 2
I recently dug up some of my old simulations after to my surprise 3SAT and a theoretical expansion of boltzmann statistics reminded me I already simulated something like that but I didnt know how good a simulation it was. Check how the varying density and shape of electron clouds and soliton-like or fluid drop like blobs of field gradually start to point outward and get thinner, like a soliton is bell curve shaped as seen from outside. -
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Morpheus
MORPHEUS is a 3D MPI-OPENMP hydrodynamic simulation code
Manchester Omni-geometRical Program for Hydrodynamical EUlerian Simulations Copyright © N. Vaytet & T. O'Brien (2008-2014) The University of Manchester Current version 1.33 - 07/2014 MORPHEUS is a 3D MPI-OPENMP Eulerian second-order Godunov hydrodynamic simulation code in cartesian, spherical and cylindrical coordinates which includes radiative cooling and gravity. -
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eSBMTools
python tools for enhanced native structure-based modeling
eSBMTools: python tools that assist the setup and evaluation of native structure-based simulations of proteins and nucleic acids, both at the Cα and all-atom level. The tools interface with GROMACS and support its standard output formats. Information from other sources like bioinformatics or experimental data can be added to the standard native structure-based model (SBM). Publication to be cited: Benjamin Lutz, Claude Sinner, Geertje Heuermann, Abhinav Verma, and Alexander Schug. eSBMTools 1.0: enhanced native structure-based modeling tools. ... -
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Libraries for integration of atmospheric trajectories. Includes a basic trajectory integrator, contour advection codes and semi-Lagrangian tracer simulations.
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Interactive Web Physics is a Java, Web-based animation and problem designer tool. Anyone can quickly design mathematics or physics animations and simulations that run in a web browser. Unlike other solutions, no knowledge of programming is required.
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The ACTIVE-IST project is a set of libraries (e.g. JAUS SDK) for rapid development of cross-platform applications with Unmanned Systems using the JAUS Standard (AS5710, AS6009), Simulations, Human-Interface Devices, and more.
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Muninn
A software package for estimating generalized ensemble weights in Mark
...The SourceForge page will preserved, with the old releases. Muninn is a software package for estimating generalized ensemble weights in Markov chain Monte Carlo (MCMC) simulations. The method is full automated and makes use of the generalized multihistogram (GMH) equations for estimation the density of states [1]. The package is implemented in C++ and has a convenient interface. -
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SBSI (Systems Biology Software Infrastructure) is a suite of tools for systems biology, such as parallelized numerical algorithms, and a Java, Eclipse RCP based client for visualizing results, running simulations, and integrating SBML based plugins.
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bnmroffice
Beta version of bnmroffice v2
The program is used for bNMR data analysis. To download the latest version, please follow the link https://github.com/hsaadaoui -
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Financial System Simulator
Shows how Money is created, interest side-effects and solutions
...Shows its good and bad side-effects and possible solutions. Visit the Homepage of this Project to play around or download the Simulation. Feel free to extend the Javascript Code. With Version 4 Simulations can be saved on a Server. This needs a Webserver with MySQL and PHP5.3+Kohana Framework.
