Search Results for "image analysis algorithm" - Page 12
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Showing 655 open source projects for "image analysis algorithm"
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Ncrypt
Text and image encryption and decryption software
This software provides a mean for users to encrypt and decrypt data in the form of text and images. The program follows a basic encryption algorithm that relies on mathematical properties of matrices, such as row operations, matrix multiplication, and invertible matrices . This program works by allowing the user to input a key in the form of a matrix, on which the program bases the encryption. The program then performs the encryption. The software only works in the scope of text files with a maximum of 150 characters, and image files with a maximum size of 128 x 128. -
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Asynchwave
image analysis template library
A research project, Asynchwave library is C++ code provided in a set of source C++ files. Its purpose is to provide a comprehensive set of classes and functions for 1.1. General purpose extendable image analysis on image segments of arbitrary shape. The organization is similar to STL: there are algorithms, collections, functional objects, iterators and adaptors. This architecture allows productive and flexible programming while keeping the code as fast as possible. 1.2. Gray wavefront functions to extract convex hulls, concavities, dales, ridges, rays, angles, waterfalls, and multitude of their relations. ... -
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Animal is AN IMAging Library written in C. Its simple API supports over 80 image formats, and is intended to make massive use of other image processing libraries. Animal aims at image analysis and recognition. It is mainly the C basis of the SIP toolbox.
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PhyloPart
automated partition of phylogenetic trees
Understanding the determinants of virus transmission is a fundamental step for effective design of screening and intervention strategies to control viral epidemics. Phylogenetic analysis can be a valid approach for the identification of transmission chains, and very-large data sets can be analysed through parallel computation. Here we propose and validate a new methodology for the partition of large-scale phylogenies and the inference of transmission clusters. This approach, on the basis of a depth-first search algorithm, conjugates the evaluation of node reliability, tree topology and patristic distance analysis. -
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corrupt
This program corrupts a unix stream at a specified error rate
This program intentionally corrupts a unix stream at a specified error rate. It is for systematic analysis on the effects of data corruption. I wrote it to simulate bit-rot in file archives so I could test RAID and archive strategies for data recovery. A few short bash scripts are included so you can instantly enjoy text, image, audio, and video corruption. Just drop in your own data files called test.jpg, test.mp3, and test.mp4 and run the scripts. -
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The 'ImageJ Plugins' project is a source of custom plugins for the Image/J software. Image/J is a public domain image processing and analysis program developed in Java (http://rsb.info.nih.gov/ij/).
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Density-ratio based clustering
Discovering clusters with varying densities
This site provides the source code of two approaches for density-ratio based clustering, used for discovering clusters with varying densities. One approach is to modify a density-based clustering algorithm to do density-ratio based clustering by using its density estimator to compute density-ratio. The other approach involves rescaling the given dataset only. An existing density-based clustering algorithm, which is applied to the rescaled dataset, can find all clusters with varying... -
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...PollenF is capable of measuring all pollen features such as Polar axis, Equatorial diameter, Colpus length, Colpus width, Porus length, Porus width, Spine length, Spine width, Exine and Intine thickness, P/E and Pollen shape. The software supports .jpg, .jpeg, .png, .bmp, .gif, .tif and .tiff formats. To calibrate the software, a known distance on the image (e.g. a scale bar) is required. Users identify a line in the image of which the length is known before the tracing, and then use the scale option to set a scale. All calculations are then automatically reported in micrometers.
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GUI Ant-Miner is a tool for extracting classification rules from data. It is an updated version of a data mining algorithm called Ant-Miner (Ant Colony-based Data Miner).
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Zika-RNAseq-Pipeline
An open RNA-Seq data analysis pipeline tutorial
RNA-seq analysis is becoming a standard method for global gene expression profiling. However, open and standard pipelines to perform RNA-seq analysis by non-experts remain challenging due to the large size of the raw data files and the hardware requirements for running the alignment step. Here we introduce a reproducible open source RNA-seq pipeline delivered as an IPython notebook and a Docker image. -
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MUMAL2
Multivariate analysis of MS/MS data using ML techniques
Program described in the paper: MUMAL2: Improving sensitivity in shotgun proteomics using cost sensitive artificial neural networks and a threshold selector algorithm, 2016. By Fabio R. Cerqueira; Adilson M. Ricardo; Alcione P. Oliveira; Armin Graber; Christian Baumgartner. -
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Gimias
Graphical Interface for Medical Image Analysis and Simulation
GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development. -
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Texinfo Web Publisher
Multi-format web publishing system based on Texinfo
Texinfo Web Publisher is a Makefile based publishing system featuring simultaneous con- tent creation into HTML, non-split HTML, Framed HTML, HTML Zip, XML, DocBook, PDF, DjVu, PostScript, DVI, Plain text, Info and EPUB book formats. All Texinfo Web Publisher output formats are from a single source. Texinfo Web Publisher can be used for website creation has FTP deployment capabilities and supports Cascading Style Sheets (CSS). Texinfo Web Publisher is a low maintenance solution for... -
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MORO can conveniently analyze the relationship between network modularity and robustness. We employed an existing algorithm to analyze the modularity of directed graphs and a Boolean network model for robustness calculation. In particular, to ensure the robustness algorithm’s applicability to large-scale networks, we implemented it as a parallel algorithm by using the OpenCL library. A batch-mode simulation function was also developed to verify whether an observed relationship between...
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ds-Bidens
Software for studying bacterial colony features
Software for studying bacterial colony features: Optical forward-scattering systems supported by image analysis methods are increasingly being used for rapid identification of bacterial colonies. The conventional detection and identification of bacterial colonies comprises a variety of methodologies based on biochemical, serological or DNA/RNA characterization. Such methods involve laborious and time-consuming procedures in order to achieve confirmatory results. -
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E-Reader
Extreem Reader for Cosmological simulation data P-Gadet2 and ART codes
Extreem Reader for Cosmological simulation data P-Gadet2 and ART codes.It conserves memory by using memory mapped files. Contains some basic analysis tools such a KD-Tree, Minimum Spanning Tree, and rendering module using PMViewer algorithm. -
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Attitude Estimator
A C++ implementation of a nonlinear 3D IMU fusion algorithm.
Attitude Estimator is a generic platform-independent C++ library that implements an IMU sensor fusion algorithm. Up to 3-axis gyroscope, accelerometer and magnetometer data can be processed into a full 3D quaternion orientation estimate, with the use of a nonlinear Passive Complementary Filter. The library is targeted at robotic applications, but is by no means limited to this. Features of the estimator include gyro bias estimation, transient quick learning, multiple estimation algorithms, tuneable estimator parameters, and near-global stability backed by theoretical analysis. ... -
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thinkpad-ec
Infrastructure for examining and patching Thinkpad embedded controller
thinkpad-ec is a community effort to study and patch the embedded controller (EC) firmware used in certain classic Lenovo ThinkPad models. The EC is a tiny microcontroller that governs low-level features such as keyboard scan codes, fan behavior, battery checks, and thermal policies—things the operating system can’t normally change. This project documents the EC’s layout and provides tooling to extract, analyze, and modify EC images so users can apply specific fixes or enhancements. Common... -
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CRFasRNN
Semantic image segmentation method described in the ICCV 2015 paper
CRF-RNN is a deep neural architecture that integrates fully connected Conditional Random Fields (CRFs) with Convolutional Neural Networks (CNNs) by reformulating mean-field CRF inference as a Recurrent Neural Network. This fusion enables end-to-end training via backpropagation for semantic image segmentation tasks, eliminating the need for separate, offline post-processing steps. Our work allows computers to recognize objects in images, what is distinctive about our work is that we also recover the 2D outline of objects. Currently we have trained this model to recognize 20 classes. This software allows you to test our algorithm on your own images – have a try and see if you can fool it, if you get some good examples you can send them to us. ... -
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This paper represent a development and deployment and/or Implementation of Optical Character Recognition (OCR) to translate images of typewritten or handwritten characters into electronically editable format by preserving font properties. OCR can do this by applying pattern matching algorithm. The Recognized characters are stored in editable format. Thus OCR make the computer read the printed documents discarding noise. Keywords- Optical Character Recognition, Image convert to character, Image cropping.
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ooPorter
A Porter stemming or stemmer algorithm coded in ooRexx
This is an ooRexx line-by-line port from Ansi-C to ooRexx of the stemming routine published by Martin Porter 1980. The original source code from Porter has been commented out and emulated by the corresponding (oo)Rexx code as far as possible. This is not an example of good or fast (oo)Rexx programming, it is merely a demonstration of the Porter stemming routine ported to ooRexx, use and modify as necessary. Input to the program is a textfile with words to be stemmed, one per line.... -
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KaryoF, Görüntü Analiz Sisteminin PolenF yazılımından sonra ikinci ürünü olarak araştırmacıların kullanımına sunulmuştur. Kolay arayüzü, kullanım dilinin tamamen Türkçe olması, ölçeklendirme ayarları, homolog kromozomların otomatik veya manuel olarak doğru bir şekilde eşlenme özelliği, birden fazla metafaz sonuçlarının tek tuşla birleştirilerek güvenilir sonuçlar elde edilmesi, literatürdeki bütün karyotip simetri-asimetri indekslerinin hesaplanması ve sonuç birleştirme özelliği ile...
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CCKDM
Concern Mining
This is a tool for concern mining which uses a KDM model as input and the output is the same model with annotated concerns. It uses a Concern Library and a modified String Clustering K-means algorithm with Levenshtein metric to cluster the strings. -
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Gamera is a framework for the creation of structured document analysis applications by domain experts. It combines a programming library with GUI tools for the training and interactive development of recognition systems.