Search Results for "research database" - Page 11
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Showing 1724 open source projects for "research database"
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OpenGIA
General Intelligence Algorithm
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SIMM
SIMM: Simultaneous Identification of Multiple Mutations
SIMM (Simultaneous Identification of Multiple Mutations) pipeline provides a workflow to align the clean reads to reference genome, call SNPs between mutants and reference genome, then genotype the SNPs and identify causal mutations from different mutants simultaneously without the sequencing information of wild-type progenitor. Individuals with mutant homozygous phenotype are bulked and sequenced to >20X, and then analyzed with SIMM to identify causal mutation(s) responsible for the mutant... -
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GNAT
GNAT recognizes gene names in text and maps them to NCBI Entrez Gene
GNAT is a BioNLP/text mining tool to recognize and identify gene/protein names in natural language text. It will detect mentions of genes in text, such as PubMed/Medline abstracts, and disambiguate them to remove false positives and map them to the correct entry in the NCBI Entrez Gene database by gene ID. March 2017: We started to upload GNAT output on Medline. See files/results/medline/. -
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Open-source Python software library and GUI desktop environment for direct bioinformatic analysis of mass-spectrometry data through powerful scripting tools and interfaces to many machine data formats, database search engines, and peptide data formats. For a copy of the source code, check out our Github repositories: mzDesktop: https://github.com/MaxAlex/mzDesktop multiplierz: https://github.com/MaxAlex/multiplierz
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Jena is Java toolkit for developing semantic web applications based on W3C recommendations for RDF and OWL. It provides an RDF API; ARP, an RDF parser; SPARQL, the W3C RDF query language; an OWL API; and rule-based inference for RDFS and OWL. Jena is now an Apache project: http://jena.apache.org/
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ATOMKI Common Data Acquisition
Nuclear physics data acquisition system
Nuclear physics data acquisition system. The suit of applications can be used to collect data from physics experiments using CAMAC/CAEN/VME devices. The system is quite specialized, but the code can still be useful for others doing something similar... -
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Genetic Oversampling Weka Plugin
A Weka Plugin that uses a Genetic Algorithm for Data Oversampling
Weka genetic algorithm filter plugin to generate synthetic instances. This Weka Plugin implementation uses a Genetic Algorithm to create new synthetic instances to solve the imbalanced dataset problem. See my master thesis available for download, for further details. -
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Specify Software
Biodiversity Database Platform
Specify is a biological collections and species occurrence database management platform for zoological museums, herbaria and other biodiversity specimen repositories. Specify is supported by grants from the Division of Biological Infrastructure, U.S. National Science Foundation and the State of Kansas. A web browser application, Specify 7, is available on GitHub. In 2015, 450 biological collections worldwide use Specify Software for collections data management. An iPad app, Specify Insight... -
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JabRef
JabRef is a graphical application for managing bibliographical data
JabRef is a graphical application for managing bibliographical databases. JabRef is designed specifically for BibTeX bases, but can import and export many other bibliographic formats. JabRef runs on all platforms and requires Java 1.8 or newer. -
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OpSim - Open Source Process Simulator
An open source process simulator
**19-OCT-2017 PROJECT MOVED TO GITHUB** OpSim is an open source Chemical Engineering Process Simulator with a user friendly drag-and-drop graphical user interface (GUI) and an underlying high performance simulation engine. -
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Data Register Manager. IT scientific-research project. (Управляющий реестром данных. Научно-исследовательский проект в области информационных технологий)
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The KReator project is a collection of software systems, tools, algorithms and data structures for logic-based knowledge representation. Currently, it includes the software systems KReator and MECore and the library Log4KR: - KReator is an integrated development environment (IDE) for relational probabilistic knowledge representation languages such as Bayesian Logic Programs (BLPs), Markov Logic Networks (MLNs), Relational Maximum Entropy (RME), First-Order Probabilistic...
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mailer
A Free form-data to Email platform for anyone to use.
A Free form-data to Email platform. Anyone can fetch form data to their mail box without having to write server side code! -
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Hoa\Ruler
The Hoa\Ruler library.
Hoa is a modular, extensible, and structured set of PHP libraries. Moreover, Hoa aims to be a bridge between the industrial and research worlds. This library allows to manipulate a rule engine. Rules can be written by using a dedicated language, very close to SQL. Therefore, they can be written by a user and saved in a database. -
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Chinese Poetry
The most comprehensive database of Chinese poetry
This repository is a curated collection of Chinese poems and poets organized into catalogs, metadata, and text representations suitable for research, creative and cultural use. It includes major dynastic corpora, such as Tang and Song poems, as well as biographical and categorization data. Each poem entry is structured with fields like author, dynasty, title, content, and sometimes annotations or alternate versions. Developers and scholars can build tools that query by author, era, keyword,... -
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Bibliograph
Open Source Online Bibliographic Data Management
Bibliograph is a powerful and intuitive open source web application for the collaborative collection, editing and publishing of bibliographic data such as a bibliographies, small library collections or shared research data. It features a modern user interface similar to a desktop application. -
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Logic Lab
This is a suite of mathematical software solvers GUI
This is a suite of mathematical software solvers interface on DLV and other command-line solvers. It helps researchers and students to better comprehend their declarative definitions published on papers. The user can have links to the related papers and to the software of the corresponding definitions. -
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DataCleaner
Data quality analysis, profiling, cleansing, duplicate detection +more
DataCleaner is a data quality analysis application and a solution platform for DQ solutions. It's core is a strong data profiling engine, which is extensible and thereby adds data cleansing, transformations, enrichment, deduplication, matching and merging. Website: http://datacleaner.github.io -
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OpenATOR
Axis Transformation Object Recognition
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xinco [eXtensibe INformation COre] is a powerful Web-Service based Information and Document Management System (DMS) for files, text, URLs and contacts, featuring ACLs, versioning, full text search, an FTP-like client (easy install, J2EE+MySQL/PostgreSQL)
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OpenANN
Basic Artificial Neural Network
OpenANN is a basic artificial neural network toolset. It is not being actively maintained. For performance neural networking, consider an alternative (such as https://sourceforge.net/projects/openann-project or https://www.tensorflow.org) -
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HitKeeper is a database application for use in BioInformatics. It deals with "hits" (predicted features) on biological sequences (protein, DNA), handles incremental updates effectively, supports taxonomy, and provides original query tools.
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RTS2 - Remote Telescope System
Open source observatory control software
RTS2 is project to create an open source environment for control of a fully autonomous observatory. It is running about dozen fully autonomous observatories. Its modular design allow easily addition of new devices (to already huge supported HW list). -
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EventQL
Distributed "massively parallel" SQL query engine
EventQL is a distributed, column-oriented database built for large-scale event collection and analytics. It runs super-fast SQL and MapReduce queries. The community software … the ideal channel for companies and organizations looking for additional interactions with their community? The first AC Repair appeared in the Best AC Repair Miami research landscape as early as the end of the 2000s, but the great added value offered by these HVAC companies in Miami was not recognized or even questioned for a long time. ... -
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MMOWGLI
Massive Multiplayer Online Wargame Leveraging the Internet
MMOWGLI, the Massive Multiplayer Online Wargame Leveraging the Internet, enables collaborative thinking and innovation. Players build Ideas and Action Plans together on the Web. Play the game, change the game! MMOWGLI is a message-based game to encourage innovative thinking and collaboration by many people, connected via the Web. It has been used to study a number of topics... starting in 2021 and beyond. Years of funded support by Office of Naval Research (ONR) and more than a...
