Search Results for "alignment" - Page 11
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Showing 522 open source projects for "alignment"
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Sudamod
SudaMod is a custom Rom made based on Lineage OS
SudaMod is a custom Rom made based on Lineage OS and has given keen priority for the Performance and battery. This Rom is Bundled with many features which you will love to have in any of your Custom Roms. -
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php Kitchen Planner
A complete free web-based 3D interior planning script.
Mainly there are 3 ways of getting php Kitchen Planner to work for your website: (1). The first one is the subdomain installation working as a separate web application along your website. (example: www. yoursite. com, and planner application url will be something like: 3dplanner. yoursite. com) The above option is the most common integration, quick and affordable. For the below options you need to have a eCommerce type of website selling furniture assets: (2). The second way is... -
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SCRAM
Probabilistic Risk Assessment Tool
SCRAM is a free and open source probabilistic risk analysis tool. The tool is under development to include fault tree, event tree, common cause, and other standard analyses. -
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Web design in 4 minutes
Learn the basics of web design in 4 minutes
This repository contains a single, short tutorial that incrementally transforms a bare HTML document into a clean, readable webpage, teaching design by doing. Each step introduces one design decision—typography, spacing, color, alignment, hierarchy—and shows exactly how it changes the page. The lesson is intentionally minimal and time-boxed so beginners can grasp core principles without being overwhelmed by tooling or frameworks. It focuses on taste-building: why certain choices make text easier to scan, why rhythm and whitespace matter, and how contrast guides attention. ... -
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STAMP: Subtitling Add-In for PowerPoint
Provides ability to create captions in PowerPoint
The Subtitling Add-In for Microsoft PowerPoint (STAMP) helps Microsoft PowerPoint 2016, 2013 and 2010 users add closed captions to the video and audio files included in their presentations, which boosts their impact for those with hearing disabilities. -
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PARot polar aligner
Software for polar alignment of equatorial mounts
PARot is a program for ultra fast and precise polar alignment of equatorial mounts. You can easily achieve alignment accuracy better than 1 arcmin in 5 minutes of time. You take one image of the celestial pole, rotate the mount around the RA axis and take another image. The program compares the images and shows you the necessary adjustment. The adjustment process is controlled by the live-liew created by your camera. -
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arkwrt
A CLI tool for concepts defined in the ArchiMate® 2.1 specification
...The UNIX® philosophy favours composability as opposed to monolithic design (see https://en.wikipedia.org/wiki/Unix_philosophy). Go was selected as the implementation language because of its alignment with the UNIX philosophy and for fun. If you notice a problem with using the program, please report it via Tickets. Both UNIX® and ArchiMate® are registered trademarks of the Open Group. "But denunciatory rhetoric is so much easier and cheaper than good works, and proves a popular temptation. Yet is it far better to light the candle than to curse the darkness." -- William Lonsdale Watkinson -
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An open-source software aimed at unsupervised molecular alignment
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idwtree
Assigns orthologs using a phylogenetic tree
...The standard workflow idwtree was intended to analyze: 1. BLAST protein sequence of interest against organism(s) of interest. 2. Download all significant BLAST hits. 3. Build a multiple sequence alignment of BLAST hits with reference sequences (e.g. with CLUSTAL OMEGA or MAFFT). 4. Use the alignment to build a phylogenetic tree (e.g. with the PHYLIP package) 5. Use idwtree to assign BLAST hits to ortholog groups -
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Portable Robotics Eye Vergence Control
Eye movements control portable on different robotic stereo heads
This project provides a software module for the control of the binocular coordination of a robotic stereo head, based on a bio-inspired algorithm. The project is now available for the iCub platform to work on YARP [https://github.com/stino78/vergence-control/][1] The algorithm works on the top of a distributed representation of binocular disparity supplied by a population of binocular energy-model neural units. The project allows a robust control and adaptive binocular coordination... -
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BWA is a program for aligning sequencing reads against a large reference genome (e.g. human genome). It has two major components, one for read shorter than 150bp and the other for longer reads.
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MethyMer
Design of specific primer combinations for bisulfite sequencing
...These regions are difficult in terms of selection appropriate primers because of their low-complexity, polyN-, CG-richness, etc. MethyMer have a flexible scoring system capable of selecting primers in problematic regions (e.g. SpG islands) and includes specificity test (based on bowtie alignment against bisulfite-treated genome). It also incorporates TCGA CpG methylation (microarrays) and gene expression (RNA-Seq) data, as well as methylation-expression correlation analysis results for 20 human cancer types. ENCODE genome regions annotation data are also integrated in MethyMer -
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The Lean Mean C++ Option Parser
A no-dependencies C++ program arguments parser
...It supports the short and long option formats of getopt(), getopt_long() and getopt_long_only() but has a more convenient interface. It is a freestanding, header-only library with no dependencies, not even libc or STL. It comes with a usage message formatter that supports column alignment and line wrapping, making it ideal for localized messages with different lengths. -
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Excel2LaTeX
The Excel add-in for creating LaTeX tables
Making tables in LaTeX can be tedious, especially if some columns are calculated. This converter allows you to write a table in Excel instead, and export the current selection as LaTeX markup which can be pasted into an existing LaTeX document, or exported to a file and included via the \input command. Known to be compatible with Windows Excel 2000–2016 (32-bit and 64-bit) and Mac Excel 2004, 2011, and 2016. May also be compatible with other versions that support .xla add-ins. Does not work... -
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Genome Profiler
a wgMLST analysis tool for bacterial WGS data
...GeP uses conserved gene neighborhoods (CGN) to resolve gene paralogy. This approach allows the differentiation of orthologs from recently duplicated paralogs, which are often indistinguishable by pairwise sequence alignment. For more details, please see our publication: http://jcm.asm.org/content/53/5/1765.abstract Update 11th Sep. 2018: This project will stop updating at Sourceforge. Please download the latest version from: https://github.com/jizhang-nz Update 4th Oct. 2017: version: 2.1 bugs fixed. Update 8th Sep 2015: When using a multi-Fasta file of the the allele sequences (nt) as reference (switch -n), please use only CAPITAL letters A, T, G and C for the sequences. ... -
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...New project page: https://github.com/yesint/pteros New documentation page: https://yesint.github.io/pteros/ Pteros is the C++ library for custom molecular modeling and simulations codes designed for researchers, not for C++ gurus. Provides facilities for PDB, XTC and TRR files IO, powerful selections, geometry transformations, RMSD fitting and alignment, etc.
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aeneas
Automagically synchronize audio and text (aka forced alignment)
aeneas is a Python/C library and a set of tools to automagically synchronize audio and text (aka forced alignment). aeneas automatically generates a synchronization map between a list of text fragments and an audio file containing the narration of the text. In computer science this task is known as (automatically computing a) forced alignment. -
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High Speed Parallel Imaging (HSPI)
HSPI does parallel capture and sky surveys.
HSPI offers to the astronomer the possibility to capture pictures from the CCD camera in a fast and intuitive way, keeping under control all the instrumentation in posses. HSPI can control the CCD camera, the mount, the focuser, the filter wheel and the dome from a single interface, and not only this: these features can be added on as many observatories and instrumentations you want. HSPI is ASCOM and INDI compatible, so if you want to use particular setups like Linux computers connected... -
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HMM-GRASPx
HMM Profile-based targeted assembly and alignment for metagenomics
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IPAS for protein sequences
multiple alignment algorithm for protein sequences
IPAS is a new and practial protein multiple sequence alignment algorithm based on iterative progresive alignment algorithm Assessed on BAliBASE 3.0, PREFAB 4.0, SABMARK 1.65, and OXBENCH, MSAProbs achieves the statistically highest alignment accuracy, compared to ClustalW 2.0.10, MAFFT 6.717( using L-INS-i with --maxiterate = 1000), MUSCLE 3.8.31, ProbCons 1.12, and Probalign 1.3. -
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...Assessed on BAliBASE 3.0, PREFAB 4.0,SABMARK 1.65, and OXBENCH, IPAS gives accurate alignment compared to the existing well known methods: T-Coffee, MUSCEL, and MAFFT.
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Gallop
A framework for build smooth asynchronous iOS APP
...You can easy to insert local images,web images or UIView object in the text. Easily add click and long press events to the text. Easily draw text frame bouding, drawing the hollow words, sets the text vertical Alignment property, etc Easy to parse the expression in the text, like http(s) link, @ user, # theme #, phone number. Fast to sets the image corner radius property and blur processing, can be processed directly after the image. -
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adapter trimmer
We implement a very simple approach. Each read is searched for the jun
...If a match to either side of the junction is found then the entire 38bp juncton is clipped. This means the algorithm can tolerate an indel error in one of the sides of the junction, but not both. Optionally Smith-Waterman alignment can be turned on with -w which resolves this issue, although the code is less tested. eg. this will be caught: CTGTCTCT-TA-TACACATCTAGATGTGTATAAGAGACAG but not this: CTGTCTCT-TA-TACACATCTAGATGT-GTATAAGAGACAG -
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