Search Results for "segmentation" - Page 10
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Showing 329 open source projects for "segmentation"
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Welsh Natural Language Toolkit
WNLT is a suite of open source natural language modules for the Welsh
The project supports the Welsh Language Technology domain with a set of NLP tools that drive innovation and advance the development of sophisticated textual analysis solutions. The WNLT project delivers four core NLP modules; a) Word Segmentation for separating text into words b) Sentence Boundary Disambiguation for finding sentence boundaries c) Part of Speech Tagger for determining the part of speech of each word d) Morphological Analyser for identifying the root form (lemma) of words. The modules are written in JAVA and ‘wrapped’ for execution under the General Architecture for Text Engineering (GATE) framework. ... -
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The"Amip" GUI is intended to provide code examples of the methods proposed in: "Unsupervised image segmentation for microarray spots with irregular contours and inner holes" authors: Bogdan Belean, Monica Borda, Jörg Ackermann, Ina Koch and Ovidiu Balacescu Journal: BMC Bioinformatics, 2015, 16:412 https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0842-3 PDE were used for grid alignment, whereas autocorrelation driven PDE and k-means clustering were used for spot segmentation. ...
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VolumStudio3d
Volumetric Rendering Software
...THE INSTRUCTIONS TO COMPILE ARE NOT YET AVAILABLE -- Based on VTK 4.2.2 / Java 1.4 An old software wrote several years ago (1999 - 2002). - Volumetric Rendering - Virtual endoscopy - Segmentation (extract/isolate parts from volum) - Pattern Search (intestinal polyps search) -
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...In object tracking, the object is located and the moving object is followed. One of the fundamental steps in many computer based vision systems for object tracking and motion detection is real-time segmentation of moving regions in the image sequences. Segmentation is done in order to detect the object accurately. Usually cameras are used as input sensors, for recording. Front end- MATLAB
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as3delaunay
Delaunay triangulation and Voronoi diagram for Flash Builder 4 project
...It is based on the well-known work of Raymond Hill and offers developers an efficient way to create and manipulate geometric structures for use in Flash and other AS3-based environments. The library enables users to generate Voronoi diagrams from a set of input points, allowing applications such as procedural map generation, image segmentation, and spatial partitioning. By handling complex geometric relationships automatically, it simplifies the process of building interactive or data-driven visualizations. The project emphasizes performance and mathematical accuracy while maintaining readability for developers working in ActionScript. Its codebase serves as a reliable foundation for anyone implementing geometry-based algorithms or graphical systems within AS3 projects. -
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BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.
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Automatic cell lineage reconstruction
Automatic segmentation and tracking for 3D time-lapse microscopy
From Amat et al., Nature Methods, 2014*: "The comprehensive reconstruction of cell lineages in complex multicellular organisms is a central goal of developmental biology. We present an open-source computational framework for segmentation and tracking of cell nuclei with high accuracy and speed. We demonstrate its (1) generality, by reconstructing cell lineages in four-dimensional, terabyte-sized image data of fruit-fly, zebrafish and mouse embryos, acquired with three different types of fluorescence microscopes, (2) scalability, by analyzing advanced stages of development with up to 20,000 cells per time point, at 26,000 cells min-1 on a single computer workstation, and (3) ease of use, by adjusting only two parameters across all data sets and providing visualization and editing tools for efficient data curation. ... -
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Advanced Normalization Tools ( ANTs )
Multidimensional image registration, segmentation and statistics
*** This is an archive only, please see https://github.com/ANTsX for this and other ANTsX tools *** Image registration with variable transformations (elastic, diffeomorphic, diffeomorphisms, unbiased) and similarity metrics (landmarks, cross-correlation, mutual information, etc). Image segmentation with priors & nonparametric, multivariate models. *** Current ANTs code, binaries (Mac, Windows, Linux) and support is hosted at Github *** https://github.com/ANTsX/ANTs Docker hub: https://hub.docker.com/u/antsx Older code and binaries remain available here on SourceForge (1.9x, pre 2014). If you are new to ANTs you should probably go to Github and get the latest code. -
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DRAMMS
A Deformable Medical Image Registration Toolbox
DRAMMS is a software package designed for 2D-to-2D and 3D-to-3D deformable medical image registration tasks. Released by Section of Biomedical Image Analysis (SBIA) at the University of Pennsylvania. Some typical applications of DRAMMS include, -- Cross-subject registration of the same organ (can be brain, breast, cardiac, etc); -- Mono- and Multi-modality registration (MRI, CT, histology); -- Longitudinal registration (pediatric brain growth, cancer development, mouse... -
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MatrixUser
A Multi-functional GUI-based Program for Image Processing and Analysis
The MatrixUser project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MatrixUser/ Most of the medical images (e.g. CT, MRI, PET, etc.) comprises multiple frames which represent slices, phases, timing etc. from the same imaging object. Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation. However, within Matlab, most of image manipulation functions are limited or... -
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ijTools
A set of plugins and tools for ImageJ (Image processing sofware)
A collection of plugins and tools for the ImageJ software. Contains modules for image filtering (directional filtering), segmentation, analysis (perimeter estimation, geodesic diameter...), or visualisation (image overlay). -
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GeoSegmenter
A Chinese word segmenter for the geoscience domain
GeoSegmenter is a Chinese word segmenter built specifically for the geoscience domain. It uses the conditional random fields (CRF) framework to build segmentation models. GeoSegmenter is trained with manually annotated geoscience documents. -
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K-Surfer
A KNIME extension for the management and analysis of FreeSurfer Data
...K-Surfer consists of a suite of KNIME nodes that perform several tasks, such as importing diffusion data generated from TRACULA, importing morphological measures obtained from the segmentation and reconstruction of neuroimages and visualising the probability distribution of white matter pathways. For installation guide read the pdf inside the zip. References: Sarica Alessia, Giuseppe Di Fatta, and Mario Cannataro. "K-Surfer: A KNIME Extension for the Management and Analysis of Human Brain MRI FreeSurfer/FSL Data." ... -
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Quant-CT
Micro-CT image stack segmentation and quantification
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Automatic Compound Processing (AuCoPro)
Automatic compound splitting and semantic analysis of compounds
...Specifically, we will explore the possibility to create new knowledge about closely-related languages, and efficiently develop additional, more advanced resources for (a) compound segmentation; and (b) the semantic analysis of compounds; as such, the project will be divided into two interrelated subprojects, to be executed simultaneously. The focus in this project will be on Afrikaans (with Dutch as the closely-related, well-sourced language), which will lay grounds for future work on other closely-related language pairs. -
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WM Hyperintensities Segmentation Toolbox
Open Source White Matter Hyperintensities Segmentation Toolbox
Wisconsin White Matter Hyperintensity Segmentation [W2MHS] and Quantification Toolbox is an open source MatLab toolbox designed for detecting and quantifying White Matter Hyperintensities (WMH) in Alzheimer’s and aging related neurological disorders. WMHs arise as bright regions on T2- weighted FLAIR images. They reflect comorbid neural injury or cerebral vascular disease burden. -
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Wukong
Highly customizable full-text search engine
Efficient indexing and searching (1M Weibo 500M data is indexed in 28 seconds, search response time is 1.65 milliseconds, and search QPS is 19K). Support Chinese word segmentation (concurrent word segmentation using the sego word segmentation package, speed 27MB/sec). Support to calculate the proximity distance of keywords in the text (token proximity). When a request to add a document to the index comes in, the main coroutine will send the text to be segmented to a word segmentation coroutine through a channel, and the coroutine will segment the text and send it to a word segmentation through another channel. ... -
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2P Toolbox
Two-Photon Data Analysis Toolbox
The 2P_Tools.jar is a series of hopefully useful Fiji Plugins to evaluate data acquired by two-photon imaging. It supports multiple features like conversion to normalized image stacks, preprocessing and image segmentation. -
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Bwst
BWST is a short word for Brute-force Word-list Segmentation Technique.
Simply, it’s a brute-force word list generating application. -
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MDSTk is a collection of 2D/3D image processing tools aimed at medical images. It contains routines for volume data processing (3D filtering, segmentation, etc.) as well as fast low-level vector graphics library for surface and tetrahedral meshing. MDSTk has been forked by 3Dim Laboratory s.r.o. to provide better support and further push its development forward. Please check VPL (Voxel Processing Library) project available on Bitbucket (https://bitbucket.org/3dimlab/vpl).
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dsegen
Hierarchical Image Segmentation
A hierarchical image segmentation is a set of several image segmentations at different levels of segmentation detail in which the segmentations at coarser levels of detail can be produced from simple merges of regions from segmentations at finer levels of detail. A unique feature of hierarchical image segmentation is the the segmented region boundaries are maintained at the full image spatial resolution at all levels of segmentation detail in the hierarchy. ... -
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Ofeli (as an acronym for Open, Fast and Efficient Level set Implementation) demonstrates how to operate an image segmentation algorithm of Y. Shi and W. C. Karl |1|, using a discrete approach for the approximation of level-set based curve evolution (implicit active contours). This is a novel (2005) and fast algorithm without the need of solving partial differential equations (PDE) while preserving the advantages of level set methods, such as the automatic handling of topological changes. ...
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Component for structural analysis (graph-based concept and entity linking, segmentation and alignment of comparable texts)
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...This is not a complete calculator, don't know if it will be because i only coded it to enable myself to do quick calculations while in a terminal. Therefore it does not check for typos, and a wrong formulated expression may result into a segmentation fault. It's infix notation, and as long as you remember to always include 2 numbers per operator(including -) it should be fine. It's very important to give the exact argument number to functions as well. To use the calculator in the terminal regardless of current path, add the executable to the path for looking up programs, or simply move the program into a path already set up. ...
