Search Results for "data processing" - Page 8
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Showing 403 open source projects for "data processing"
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MZmine 2
A framework for differential analysis of mass spectrometry data
MZmine 2 is a framework written in Java for differential analysis of mass spectrometry data. -
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ProC 3.0
smart Workflow Engine
ProC 3.0 is a scientific workflow engine to build, manage and execute workflows (pipelines) in heterogeneous environments, supporting GRID and other means of parallel processing. It includes a data management component (DMC) to transparently access databases for storage of results and automatically adds metadata to track the processing of data products, so that at every time a full processing history is available. The software was developed and used within the ESA Planck satellite mission. -
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iMir
Integrated pipeline for HT miRNA-Seq data analysis
Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. -
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VisualPerspective
A diagram/modeling tool.
VisualPerspective is a modeling and diagram creation tool. It enables to create free diagrams but also semantic oriented ones (for instance UML diagrams), in order to run automatic processing (transformations, exports, parsing). There is currently no installer, so you should follow this procedure : http://enzweiler.info/visualperspective/002-installation.html You are very welcome to report any issue with VP. -
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Jaxe is a free Java XML editor with a configurable GUI, using XML schemas for validation and XSL for exports in HTML or XML.
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This is an Eclipse xml editor with several edition capabilities. The main features concern the interaction with the classes and resources declared in xml (Open class/resource, Create class), similar to the interaction between classes in java editor.
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Cascalog
Data processing on Hadoop without the hassle
Cascalog is a powerful Clojure (and Java) data processing and querying library built atop Hadoop (via Cascading), providing a high-level, Datalog-inspired abstraction for both big data processing and local computation. Cascalog is hosted at Clojars, and some of its dependencies are hosted at Conjars. Both Clo/Con-jars are maven repos that's easy to use with maven or leiningen. -
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A java-based parser for parsing/grabbing web sites and other text or XML documents, based on a nondeterministic parser language, creating XML output. Also contains a few utility classes for HTML, CSV and text parsing, and additional character sets.
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The DITA Open Toolkit is an implementation of the OASIS DITA XML Specification. The Toolkit transforms DITA content into many deliverable formats. See https://www.dita-ot.org/ for documentation and links to downloads. The source code and issue trackers have been moved to https://github.com/dita-ot/dita-ot
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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...This application has been designed to perform simple or timestamped copies of directories and files as well as unidirectional synchronization of file tree. Fisy is in command line, you can so start copying tasks at any time or plug them on an automated processing. Sine version 2.0, Fisy contains cipher features for encrypting data for storage in a remote service like the Cloud.
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Immutable Collections for Java
Immutable/Persistent Collections Library
...All collections provide immutable Cursor as well as standard Iterator classes for looping through all elements. A utility class provides functional style algorithmic processing of Cursors including foldLeft, foldRight, collect, select, and reject. The 2-3 tree and integer trie classes are optimized for performance and can be used alongside java.util Collections when immutability is needed for safe data sharing. -
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Simple Java delimited and fixed width file parser. Handles CSV, Excel CSV, Tab, Pipe delimiters, just to name a few. Maps column positions in the file to user friendly names via XML. See "FlatPack Feature List" under News for complete feature list.
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xAffect
Sensor Middleware
xAffect is a software framework for online recording, processing and storage of multi sensor data. It was developed at FZI Research Center for Information Technology, Karlsruhe, Germany. xAffect can be used as a flexible, customizable middleware between physiological sensors and applications which require online feature computation (e.g. biofeedback or affective computing). Moreover, it can also be used as a standalone application for data acquisition and visualization. -
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atf format converter
Converts files from and to asam ods aft/xml format
Provides conversion between files in aft/xml format (file format for storing of measurement data, see http://www.asam.net) and "atf". "atf" is a xml variant based on aft/xml but more suitable for xml processing for example xquery, xpath (see http://vcasterna.wordpress.com/2013/06/15/a-better-atfxml/) In atf, xml query becomes simple: e.g. navigation across parent/child relations: subtests/subtest[name='run up'] With a given test instance being the context node this selects all subtests of a given instance name. ... -
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giServer
giServer the easy to use and extensible batch and integration server
The giServer is an easy-to-use integration server for process automation and event-driven or scheduled execution of batch jobs. Instead of using complex XML configuration files an elaborate GUI for batch job management is included. Some possible usage scenarios are: - Automatic processing of incoming data files - Big Data applications - Process automation - Data Mining/Aggregation applications - Automatic Reporting - Processing and analysis of database records -
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IQuant
A pipeline for quantitative proteomics based upon isobaric tags
IQuant is an automated pipeline for quantitative proteomics based upon isobaric tags. It integrates post-processing tool of protein identification and advanced statistical algorithms to process the MS/MS signals generated from the peptides labeled by isobaric tags for quantification. IQuant can run from a graphical user interface (GUI) as well as a command-line interface and work with both Windows and Linux system. This website contains the IQuant software, an example data labeled by iTRAQ-8plex for testing and a user's manual. ... -
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Java Machine Learning Library is a library of machine learning algorithms and related datasets. Machine learning techniques include: clustering, classification, feature selection, regression, data pre-processing, ensemble learning, voting, ...
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Importer library to import assets from different common 3D file formats such as Collada, Blend, Obj, X, 3DS, LWO, MD5, MD2, MD3, MDL, MS3D and a lot of other formats. The data is stored in an own in-memory data-format, which can be easily processed. www.open3mod.com/ is a 3D model viewer and exporter based on Assimp that is also Open Source.
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Graphical Grammar Studio
An user friendly grammar tool for natural language processing tasks
Full documentation with tutorials is included in the download package. Graphical Grammar Studio is a tool for applying grammars which behave as words acceptors/consumers and annotators. GGS grammars can be used to find and annotate sequences of words which respect certain conditions, in a given input. Its purpose is for creating NLP tools like phrase chunkers, named entity finders, pronoun co-reference solvers etc. A grammar is represented by a state machine which can be visualized, edited... -
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Tockit tries to build a framework for Conceptual Knowledge Processing (CKP) and Formal Concept Analysis (FCA) in Java, using a component-based approach, XML formats and a three-tier architecture.
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android-common-lib
Android common lib, ImageCache, HttpCache, DropDownListView, etc.
The Dev Tools App is a powerful android development tool that can help you improve efficiency greatly, It can be used to view the latest open source projects, view activity history, view manifest, decompile, color picker, extract apk or so, view app info, open or close the developer options quickly, and more. Includes cache (picture cache, prefetch cache, network cache), public View (drop down and load more ListView at the bottom, load more ScrollView at the bottom, slide a page Gallery) and... -
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JavaFeedParserCommon
Provides common classes, which can be used to parse news feeds
"JavaFeedParserCommon" is a Java-library, which provides common classes and interfaces, which can be used by projects, which should allow to parse XML-based news feeds, such like RSS- or Atom-feeds. -
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Detexter
Detexter is an app designed to extract text from PDF files.
Detexter lets you extract text from multiple PDF files. Detexter uses the PDFBox library for its text extraction. -
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Consilium Sentence Suggestions Tools
Consilium – User Defined sentence Suggestion Tool.
There are many tools available in market which will provide spell correction or grammer correction while making documents, but very few tools are available which are providing sentence completion according to previously entered text. But this all are providing sentence complition suggestion for sentences which are oftenly or regularly used by all people in same manner. But in reality style of writing changes person to person. While our aim is to provide a sentence suggestion tool which... -
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NanocalcFX
Open Source Data Evaluation Software
NanocalcFX is a free and open source evaluation software for a simple yet comfortable solution to deal with thousands of transport kinetics measured with a fluorescence microscope or similar kinetics. Data can be imported from CSV or Excel files or using the dedicated image stack analyser (NISA). You can get sample data at the nanocalcFX homepage. Note that nanocalcFX is currently in a beta state.
