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musicomp is a program which most important element is an evolutionary algorithm which uses data mining methods as a fitness function to generate monophone melodies.
Molevolve is a Java library for running a GeneticAlgorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5.
CryptoServer is the daemon for handling Sign-Verify, Encryption-Dencryption, Envelop-Openenvelop based on OpenSSL including the SEED symmetric algorithm (Korean Standard Symmetric Algorithm).
It's interface is just tcp/ip socket and very easy to handle
unEvo is an Eclipse plug-in that provides support for the experimentation and research process on Evolutionary Algorithms, intended so that the user can implement an evolutionary algorithm without lost time in the code of the algorithm.
JAligner is an open source Java implementation of the dynamic programming algorithm Smith-Waterman with Gotoh's improvement for biological local pairwise sequence alignment with the affine gap penalty model.
It moves by itself inside networks like virus infection & plagues, it is being written to solve computer virus problem drastically and responsibly. It is legal, free and open for public domain to improve W3 ICT Security.
Common utility methods, classes and algorithm library for general use. Although this library focuses on common utility algorithms, main goal of this library is ease of use by trading some flexibility.
EasyAI is a project to build classical AI program and method in Java language, such as resolution for logic, greedy search, geneticalgorithm, neural network and so on...
IslandEv distributes a GeneticAlgorithm (like <a href="/projects/jaga">JaGa</a>) across a network (see <a href="/projects/distrit">DistrIT</a>) using an island based coevolutionary model in which neighbouring islands swap migrating individuals every
Gazoo is a Java framework for genetic algorithms development. Gazoo provides the core of a geneticalgorithm, leaving to the user the implementation of specific-problem classes.
A flexible and easy-to-use physics engine for 2d written in java. A similar engine for 3d in c++, and a AI able to interact with the physics engine, affecting the world, written in c++ using neural nets and genetic algorithms.
Solving the travelling salesman problem with genetic (evolutionary) algorithms. The distance calculations are based on geographical coordinates. The progress of the algorithm is visualized with a geo-map and some statistics.
The Athlete is a virtual robot living in the ODE (Open Dynamics Engine)world. An evolution algorithm is implemented based on the DR-EA-M to optimize its performances. This involves a Geneticalgorithm, network of neurons and morphology. All is in java.
Simulated annealing package written in Java using simplex downhill algorithm from Numerical Recipies in C++/FORTRAN/C
It is intended for use "behind the scenes" in applications, and it is optimised for ease of integration.
Completely standalone,
MAGMA: Multiobjective Analyzer for Genetic Marker Acquisition
A geneticalgorithm for generating SNP tiling paths from a large SNP database
based on the competing objectives of cost (number of SNPs) and coverage (haplotype blocks):
Hubley R., Zitzler
Java port and extension of MLC++ 2.0 by Kohavi et al. Currently contains ID3, C4.5, Naive (aka Simple) Bayes, and FSS and CHC (geneticalgorithm) wrappers for feature selection. WEKA 3 interfaces are in development.
Domigene is a geneticalgorithm API attempting to incorporate dominant and recessive genes. Supports modular evolution types, genetic programs, definable instruction sets, variation in population, chromosomes, mortality, mutation, fitness functions.
A collection of implementations of the Lovins stemmer as described in "Development of a Stemming Algorithm" by Julie Beth Lovins (published in "Mechanical translation and computational linguistics", 11:22-31, 1968).