Search Results for "research" - Page 43
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Showing 4992 open source projects for "research"
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cy2fluxviz
cy2fluxviz : Cytoscape 2 plugin for flux distribution visualization
cy2fluxviz - Cytoscape 2 Plugin for the visualization of flux distributions in networks. Latest releases from https://github.com/matthiaskoenig/cy2fluxviz -
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WSAG4J: WS-Agreement Framework for Java
WS-Agreement Framework for Java
WSAG4J is a Java Framework to establish and manage Service Level Agreements (SLAs) in distributed systems. -
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ExpressionOasis is a java based framework for evaluating the various type of expressions like arithmatic, logic expression etc. The framework is flexible enough to define any new grammer rules or operators.
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Texlipse is a plugin that adds Latex editing support for the popular Eclipse Java IDE. Key features include: syntax highlight, command completion, bibliography completion, outline navigation and automatic building.
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Stop vibe-debugging.AppSignal's MCP server hands Claude, Cursor, or Zed your real errors, traces, and the deploy that shipped them. AI writes the fix; you review the diff.
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ActiveFolder
ActiveFolder can be integrated with existed scientific computation.
Welcome to the ActiveFolder project, the open source for management simulataion data and reproducing. ActiveFolder provide data reproduction for comparative study and searching reproduction data, by storing data coupled with provenance information. ActiveFolder is integrated existed grid computing service and cloud services. And also, ActiveFolder can be integrated with existed scientific computation, analysis and visualization software without modification. -
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OPEN GENERAL SCIENTIFIC INTERFACES homepage : http://www.opengsi.org
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QueLang
QueLang is a designing tool to use for Questionnaire Design.
This is the first implementation of QueLang. QueLang is a language I designed for Questionnaire Design and Implementation. This software can compile your code (written in .ql text files) into a special .qlc format (a kind of database). Then it can read those .qlc files to open them in viewer and export them to PDF format. It can be also used for exam and test designing! Tested on: -Linux Ubuntu 12.04 -Windows 7 64-bit QueLang can run by double clicking the .jar (or .exe)... -
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Concurrency Freaks
A library with Scalable (and fast) Read-Write locks
This library contains Java code for several Read-Write Locks: - ScalableRWLock: A rw-lock that scales with the number of threads doing read-lock. - ScalableRWLockS: Similar to above but different implementation. - ScalableStampedRWLock: An hybrid of the ScalableRWLock and the StampedLock provided in JDK 8, which provides good overall performance. - FAARWLock: Uses a Fetch-And-Add operation for the read-lock which means it is not so scalable as ScalableRWLock but it is still faster than... -
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MEISE
Native note editor for the MEI encoding format
The MEI Score Editor (MEISE) is an eclipse-based music notation editor for the musicological XML-based encoding format of the Music Encoding Initiative – MEI (http://music-encoding.org). It is developed at the Musicology Seminar Detmold/Paderborn, University of Paderborn (http://muwi-detmold-paderborn.de) as part of the german part of the research project "Digital Research Infrastructure for the Arts and Humanities" – DARIAH-DE (http://de.dariah.eu). For detailed information about the MEI Score Editor development project please go to https://de.dariah.eu/mei-score-editor. -
Host LLMs in Production With On-Demand GPUsDeploy your model, get an endpoint, pay only for compute time. No GPU provisioning or infrastructure management required.
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EDNA
Energy Based Multiple Sequence Alignment (MSA) for Binding Sites
Multiple Sequence Alignment for Transcription Factor Binding Sites using Di nucleotides dependencies and relying on Free Interaction energies between neighbouring DNA bases to stabilise substitution energy of the alignment. http://www.ncbi.nlm.nih.gov/pubmed/23990411 -
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This package provides the following pure Java extensions to the Bouncy Castle framework www.bouncycastle.org and was made freely available by www.novosec.com: 1. OCSP (RFC 2560) server and client / 2. CMP (RFC 2510, RFC 2511) generator and parser
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xSonify
Java-based sonification data analysis
xSonify is a Java-based sonification data analysis prototype for displaying science data as sounds, with an emphasis on supporting visually-impaired researchers. Alternatives include Sonification Sandbox <http://sonify.psych.gatech.edu/research/>, MathTrax and Earth Plus <http://prime.jsc.nasa.gov/>, Sonifyer <http://www.sonifyer.org> and SoniPy <http://sourceforge.net/projects/sonipy/>. More at the main forum for sonification, ICAD <http://icad.org> -
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OPTIMA cidoc-crm Semantic Annotation
Semantic annotation of archaeology reports with respect to CIDOC-CRM
The semantic annotation system OPTIMA is the result of Andreas Vlachidis PhD work, (supervised by Prof. Douglas Tudhope, University of Glamorgan, UK). OPTIMA performs the NLP tasks of Named Entity Recognition, Relation Extraction, Negation Detection and Word Sense Disambiguation using hand-crafted rules and SKOS terminological resources (English Heritage Thesauri and Glossaries). The resulted semantic annotations are associated with classes of the (ISO 21127:2006) CIDOC Conceptual... -
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Atan is an interface to the RoboCup Soccer Server for the 2D simulation league. It should allow you to concentrate on the job of controlling your clients without having to worry about the communication syntax with SServer or creating the UDP connections.
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Platform for Annotated Corpora in XML Integrated tool for corpus linguists built on Eclipse, Vex, Subversive, etc. for creating and editing transcriptions and annotations, querying, managing version controlled data, and building a shippable corpus.
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DimerRemover
Remove adapter dimers from NGS data
This program can be used to count or remove adapter dimers in fastq files. Using a provided adapter sequence, it generates variations of this sequence and stores them in a hash table. The reads can then be directly matched against the hash. It is far more time efficient than doing alignment. -
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Bermuda Text-to-Speech
This project includes basic NLP and DSP techniques for Text-to-Speech
See TTS demo at: http://rslp.racai.ro/index.php?page=tts This is an entirely written in JAVA project which includes a set of tools and methods designed to enable Multilingual Text-to-Speech (TTS) synthesis. We currently support English and Romanian but we will soon train more models and make them available for download. If you want to read more about our other NLP and TTS tools check out http://nlptools.racai.ro. -
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Japrosim is a java library for both discrete event and continuous simulation. GUI for modeling and automatic code generation are offered. An explanation module is integrated. Models are described in XML and owl for interoperability.
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Experiment Design and Administration for Computer Clusters. Latest source code on http://github.com/edacc
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DSOL
DSOL: A Distributed Simulation Object Library implemented in Java
DSOL is a full featured multi-formalism, distributed simulation environment developed at Delft University of Technology (The Netherlands). DSOL has support for discrete event and for continuous modeling. Formalisms supported are event scheduling, DEVS, flow-based simulation, and continuous modeling through sets of differential equations. The first release was introduced at IEEE's Winter Simulation Conference in 2002. Since then, numerous papers and PhD dissertations have been developed, with... -
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A next gen sequencing analysis pipeline designed to run on hadoop/hdfs written in java and PIG. For more info, contact Zack Ramjan at USC
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Statcato is a Java software application for elementary statistics. Its features include data and graph generation, probability distributions, descriptive statistics, confidence intervals, hypothesis tests, correlation, regression, and analysis of var
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The objective of this project is to make available an open-source version of our Multifactor Dimensionality Reduction (MDR) software. MDR is a nonparametric alternative to logistic regression for detecting and characterizing nonlinear interactions.
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Error-corrector for pyrosequenced amplicon reads.
