Search Results for "ekho-data" - Page 35
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Showing 6133 open source projects for "ekho-data"
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Time Selector
Java Swing Time Selection textfield
A custom Swing text field for time data entry that allows selecting any 24-hour time with just 3 mouse clicks. -
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Oryx
Lambda architecture on Apache Spark, Apache Kafka for real-time
Oryx 2 is a realization of the lambda architecture built on Apache Spark and Apache Kafka, but with specialization for real-time large-scale machine learning. It is a framework for building applications but also includes packaged, end-to-end applications for collaborative filtering, classification, regression and clustering. The application is written in Java, using Apache Spark, Hadoop, Tomcat, Kafka, Zookeeper and more. Configuration uses a single Typesafe Config config file, wherein... -
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MarDRe
MapReduce-based tool to remove duplicate DNA reads
MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets. This tool allows bioinformatics to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset. MarDRe is the Big Data counterpart of ParDRe (link above), which employs HPC technologies (i.e., hybrid MPI/multithreading) to reduce runtime on multicore systems. Instead, MarDRe takes advantage of the MapReduce programming model to significantly improve ParDRe performance on distributed systems, especially on cloud-based infrastructures. Written in pure Java to maximize cross-platform compatibility, MarDRe is built upon the open-source Apache Hadoop project, the most popular distributed computing framework for Big Data processing. -
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HSRA
Hadoop spliced read aligner for RNA-seq data
...This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a distributed computing framework for scalable Big Data processing. HSRA currently supports single-end and paired-end read alignments from FASTQ/FASTA datasets. Moreover, our tool uses the Hadoop Sequence Parser (HSP) library (link above) to efficiently read the input datasets stored on the Hadoop Distributed File System (HDFS), being able to process datasets compressed with Gzip and BZip2 codecs. -
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OverlappingTreesPlainMap
The utility for quickest manipulations with difficult data.
...It can run on mobile devices. Do not use linear algorithms, the speed is only slightly dependent on the size of data. -
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The 4Ever framework provides a OO access layer to a single or a set of XML files. The framework offers a set of basic management services as loading/saving, change history, and consistency checking. It is realized in a component-oriented way.
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An easy to use application to design your kitchen garden or your house farm. Helps you plan your plants ( vegetables, fruit trees, herbs, flowers ) so that it respects the rules of crop rotation and companion planting. Based on square foot gardening. Requires Java 8.
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ANDS PID Client is a generic Java client library for accessing the ANDS Persistent Identifier service and the Digital Object Identifier Service. Written by CSIRO Australia and funded by the ANDS Australian Research Data Commons Project .
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CobolToCsv
Convert Cobol Data Files to/From Csv
This project will convert Cobol Data Files to/From Csv files using a Cobol Copybook. -
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KittyORM
KittyORM is an ORM library designed for use with Android and SQLite.
KittyORM is an Object-Relational Mapping library designed for use with Android and SQLite. It implements Data Mapper pattern design and its main purpose is to simplify interaction with SQLite database in Android applications. Written in Java 7 it supports devices from API level 9 Android. Main features we want to achieve with KittyORM are: * simple and clear API; * high flexibility of working with model POJO files via database mappers that grants you an ability to focus on your business processes not on working with raw SQL queries; * full support of all features to create your SQLite schema via built-in annotations; * flexible way to manage all things you may want to change or implement; KittyORM project contains ORM library itself, demo and tutorial application available at Play Market and documentation located at https://akaish.github.io/KittyORMPages/ Current version: [0.1.2] -
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pvr-rename
JAVA application for renaming PVR recordings based on EIT data
A small utility that reads recordings' meta data from .eit files in a directory, creates a CSV from that. That CSV can then be edited in a spreadsheet in order to define the target filenames. E.g. you may want to add season and episode numbers, subtitles &c to the target filename. This CSV can then be read by the tool to actually rename the recordings. All files with the same basename are renamed. -
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XML:DB provides a community for collaborative development of specifications for XML databases and data manipulation technologies. Along with each specification an open source reference implementation will be developed to validate the ideas.
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JspMyAdmin2
JspMyAdmin 2 - A Java Web tool for MySql database administration
JspMyAdmin 2 is the software for MySql database administration over Web. It provides a user friendly design to manage most of the MySql database administration. Create and Manage database objects (Databse, Table, View etc..) with simple mouse clicks. -
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MorganaXProc (Implements XProc 1.0)
A Java implementation of XProc: An XML Pipeline Language
This project is now abandoned in favour of MorganaXProc-III which implements XProc 3.0: https://sourceforge.net/projects/morganaxproc-iiise/ MorganaXProc is a full implementation of XProc: An XML Pipeline Language (W3C Recommendation 11 May 2010) written in Java, supporting all required and optional steps, the steps proposed on EXProc.org and also the document templating steps "p:in-scope-names" and "p:template". XPath 2.0 or XPath 3.0 is used as expression language. XSLT and XQuery... -
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GMOL
A tool for 3D genome structure visualization
...It allows users to view the genome structure at multiple scales, including: global, chromosome, loci, fiber, nucleosome, and nucleotide. This software was built upon the pre-existing Jmol package by Prof. Cheng's group. The software is developed in Prof. Jianlin Cheng's Bioinformatics, Data Mining and Machine Learning Laboratory in the Computer Science Department at the University of Missouri - Columbia, USA. The project is supported by the National Science Foundation (grant no. DBI1149224). If you use GMOL in your research, please cite: Nowotny, Jackson, Avery Wells, Oluwatosin Oluwadare, Lingfei Xu, Renzhi Cao, Tuan Trieu, Chenfeng He, and Jianlin Cheng. ... -
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Wyrm Tools
A suite of tools for any RPG system
...The core functionality of the platform includes a robust asset management system and a character generator/editor. Users can create their own game systems, tools, data formats, etc. -
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CallbackParams is a JUnit-extension for writing parameterized tests with new innovative patterns that offer elegant solutions to many of the drawbacks that are traditionally associated with parameterized testing.
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JBotSim is a multipurpose dynamic network simulator that allows to quickly prototype a distributed algorithm and test its behavior on a set of static or mobile nodes. If mobile, the nodes can be controlled by the mouse or by program.
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With Alfresco Audit Analysis and Reporting (A.A.A.R.) is provided a solution to extract, store and query audit data together with the document/folder informations at a very detailed level, with the goal to be useful to the end-user in a very easy way. To reach that goal, to make the data more friendly for the end-user, the data are published in reports in well-known formats (pdf, Microsoft Excel, csv, etc.) and stored directly in Alfresco as static documents organized in folders, versioned, authorized and published. ...
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Effectopedia is open knowledge aggregation and collaboration tool that provides a means of describing adverse outcome pathways in encyclopedic manner.
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mirplant
miRPlant: An Integrated Tool for Identification of Plant miRNA
please cite: An J, Lai J, Sajjanhar A, Lehman ML, Nelson CC: miRPlant: an integrated tool for identification of plant miRNA from RNA sequencing data. BMC bioinformatics 2014, 15(1):275. We will create index for you if you tell us your interested plants (j.an@qut.edu.au). -
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A genome wide mapping data interpretation platform for NGS(ChIPSeq). A tutorial can be found at: http://genomeast.igbmc.fr/wiki/doku.php?id=training:seqminer
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Fudaa
https://gitlab.com/fudaa
Official site: https://fudaa-project.atlassian.net/wiki/spaces/FUDAA/overview Sources moved to GitLab: https://gitlab.com/fudaa -
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Active Intelligence Server
Reporting, Dashboarding, Analytic, Self-service BI, Ad-hoc reporting
Active Intelligence Server 2 (AIS) is a data visualization tool and fully featured reporting server which enable users from open source community to host any reports created using BIRT, Jasper and Pentaho community edition allowing organization to leverage open source technologies and enable them to use AIS as a reporting server to deploy their existing and new reports seamlessly onto AIS for secure sharing the information in different file formats and schedule to make system automation and much more. ... -
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iText®, a JAVA PDF library
PDF Library for Developers
iText is an open-source PDF library available for Java and .NET (C#). iText allows you to effortlessly generate and manipulate standards-compliant PDF documents with a powerful and feature-rich SDK. With iText, you can create archivable and accessible PDFs, split and merge documents, fill and flatten forms, digitally sign documents, and more. iText add-ons enable additional functionality, such as PDF creation from HTML templates, secure redaction, OCR, and much more. The latest...
