Search Results for "pipeline" - Page 3
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Showing 83 open source projects for "pipeline"
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A new open-source tool that integrates pipeline automated identification and phylogenetic studies of microbial communities using genes sequences
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PileLine (Pileup pipeLine) is a toolkit for efficient handling of genomic position (GP) files, produced by next-generation sequencing experiments. It is designed to be memory efficient by performing on-disk operations over sorted GP files.
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A wrapper for Apache UIMA (http://incubator.apache.org/uima/) that connects to the Open Biomedical Annotator (OBA) rest service from the National Center for Biomedical Ontology (http://www.bioontology.org/wiki/index.php/Annotator_User_Guide).
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This is a pipeline that is used to store an EST or Genome assembly information including reads and their alignment in a mysql database. Further more, it provides a set of scripts to mine SNPs and other statistics from the assembly.
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ContractSafe: Contract Management SoftwareDitch those spreadsheets, shared drives & crazy-expensive solutions with too many bells & whistles. ContractSafe offers the simplest way to manage your contracts efficiently without breaking the bank.
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jSkel es a Programmatic Skeletons Java Framework. jSkel has a set of Interfaces and Abstract Classes that should be used by java programmers in order to use the benefits of Divide & Conquer, Pipeline and Farm Programmatic Skeletons over MPJ.
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The Java Code Clone Detection API (JCCD) allows to implement individual code clone detectors. These code clone detectors can be easily integrated into other Java applications. JCCD is based on a pipeline architecture which allows to replace whole par
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Repository for the UCLA Laboratory of Neuro Imaging (LONI) Pipeline Globus Plugin Development
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Anna is lightweight Java framework to build pipeline systems of any kind. It will take care of recurrent needs such as dependency management, data serialisation and synchronization as well as parallelization of execution.
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This Project aims at developing generic Valves for Containers like Tomcat.Development will be aimed at providing detailed request tracing valves based on the native logger valves.This project is created and architected by Arunn John Moothedathu (www.arunjohn.com).
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Field Service Management Software | BlueFolderTrack all your service data in one easy-to-use system, enabling your team to move faster and generate more revenue for your bottom line.
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Tubo is a simple integration adapter that can be used by configuration or component especialization. This adapter is build with a Pipeline Achitecture in mind, using a components pipeline to do the job, configuring or extending.
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AnnaF is an automatic gene annotation framework, that is used to do some automatic annotation for C. higginsianum. It was also tested on F. graminearum and should work well for fungi in general. AnnaF was build upon the pipeline framework Anna.
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This is a visual pipeline framework for batch processing data. It is a plugin to Eclipse Platform. It is a general framework designed to be customized for specific field. One example is http://sf.net/projects/camba
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An application and development framework to support import and export processes for virtually every system. It is build around a pipeline of Java plugins.
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Scan, the Semantic Content ANnotator, is a semantic pipeline that helps connecting information extraction tools to semantic database. UIMA-based, it allows easy plugin-writing: information extraction, ontology control, store in RDF Repositories.
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BarsnPipes is a MIDI-sequencer, with a very own concept of data-flow. The GUI simulates a pipeline-system, in which the MIDI-data are flowing track by track thru a own pipeline, where they are recorded, manipulated, saved, loaded, filtered and more.
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EGL is a pure java 3D Graphics API which was designed for J2ME mobile devices and based on CLDC 1.0 only, which provided OpenGL-like interface and supports basic 3D pipeline and texture.
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A graphical data manipulation and processing system including data import, numerical analysis and visualisation. The software is written in Java and built upon the Netbeans platform to provide a modular desktop data manipulation application.
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Scribe Software is a software system for the nondestructive scanning and digitization of books with the Internet Archive's Scribe machine. The Java UI and PHP image processing pipeline produce books for www.archive.org and other digital libraries.
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The Scenario API project is dedicated to scenario/workflow/pipeline like structures creation and execution. It includes the abstraction level, which is defined in subproject SDM (Scenario Definition Model) and one of the implementation.
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NetworkTools has 2 components: A protocol analyzer which plays a TCP client or server or pipeline, which sits between a client and server and shows how they communicate. A port scanner can scan a range of IP addresses and ports. See screenshots.
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ThreeD is a 3D rendering engine written in Java. It implements a standard rendering pipeline with perspective transformation, hidden-surface removal, and a surface normal lighting model. Original project page can be found at http://dt.org .
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The LAW workflow system is a Java application (using JBoss and PostgreSQL) intended to provide a file / user / task management system for projects that need to manage a pipeline of processes that are performed on some type of source file. The system is
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The Pipeline Architecture project (PARC) is a high performance java based batch processing framework. It utilizes the Pipe-Filter pattern from the POSA book to provide a flexible, extensible mechanism for data conversion between systems.
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SoftwareSales is an JSP Web-based Software Slaes Automation/CRM System, featuring sales forecast pipeline, contact/service management, software license contract management, email marketing, sales automation and customer relationship management