Showing 5725 open source projects for "engineering"

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  • 1

    MarDRe

    MapReduce-based tool to remove duplicate DNA reads

    MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets. This tool allows bioinformatics to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset. MarDRe is the Big Data counterpart of ParDRe (link above), which employs HPC technologies (i.e., hybrid MPI/multithreading) to reduce runtime on multicore systems....
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    NXT Line Track. w. Fuzzy Logic

    NXT Robot: Line Tracking with Fuzzy Logic

    A NXT Robot performs Line Tracking and is controlled by Fuzzy Logic.
    Downloads: 0 This Week
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  • 3

    HSRA

    Hadoop spliced read aligner for RNA-seq data

    HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a...
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  • 4
    medSLT - The Medical Speech Translator
    Downloads: 0 This Week
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  • 5

    TEESer

    Tool for Engineering Emergent Selforganizing bEhavioR

    Teeser is a java-based integration framework for engineering emergent self-organizing behavior in distributed systems. It contains tools for analysis, tuning, macroscopic probing and simulations of distributed systems. Library of tools can be extended and everybody is encouraged to provide and share its tools with the community. The main idea is to provide application designers ability to seamlessly use tools which are helpful to design self-organizing behavior.
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  • 6
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  • 7
    Glass Shutters

    Glass Shutters

    Secondary glazing for sash windows

    Application for generating CAD scripts for drawing Glass Shutters for sash windows. Glass Shutters may be used as an alternative to double glazing where it is required to preserve the appearance of your traditional sash windows. The glass is toughened and has a coating which reflects heat back into the room while still letting in heat from the sun. The frameless panels are easily opened to allow access to the window. By choosing an appropriate style, the panel divisions can be made...
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  • 8

    Ghawwas_V4

    An open source system for Arabic corpora processing

    Ghawwas (previously known as Khawas) is an open source system for Arabic corpora processing. Ghawwas V4.0 provides the following main functions: a. Frequency list for single word and N-Grams b. Concordance c. Collocation (MI, CHI Squared, LL, T-Score, Z Score, Dice, Log Dice, Weirdness Coefficient) d. Lexical patterns search e. Two corpora frequency profile comparison based on MI, CHI, LL, T-Score, Z Score, Dice, Log Dice, Weirdness Coefficient f. Accept Windows and UTF-8 character...
    Downloads: 8 This Week
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  • 9
    MathScythe

    MathScythe

    Math tool improving bundled calculations (like triangle properties)

    MathScythe improves bundled calculations, so you can enter what you have (like triangle's sides) and you get the rest without a blackboard and a bucket of broken chalk. App includes modules to calculate triangle, disk and directed angle's properties and it's still evolving and gaining new stuff.
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  • 10
    QualityControlForRadiology

    QualityControlForRadiology

    QC tests and patient doses from radiodiagnostic XRay equipment

    This software performs various quality control tests for XRay devices used in radiography, mammography, fluoroscopy and CT such as: HVL/tube filtration, high voltage, exposure time, tube output, MTF calculations, film sensitometry, AEC devices and more. It also compute patient doses using an external program based on the GEANT4 simulation toolkit. This program is found here: https://sourceforge.net/projects/doseinhumanbody/ Read the "README" file for details. Source code and...
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  • 11
    GMOL

    GMOL

    A tool for 3D genome structure visualization

    GMOL is an application designed to visualize genome structure in 3D. It allows users to view the genome structure at multiple scales, including: global, chromosome, loci, fiber, nucleosome, and nucleotide. This software was built upon the pre-existing Jmol package by Prof. Cheng's group. The software is developed in Prof. Jianlin Cheng's Bioinformatics, Data Mining and Machine Learning Laboratory in the Computer Science Department at the University of Missouri - Columbia, USA. The project...
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  • 12
    An implementation of the INDI protocol in Java
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  • 13
    DACO-algorithm

    DACO-algorithm

    A novel transcription factor complex prediction algorithm.

    Eukaryotic gene expression is controlled through molecular logic circuits that combine regulatory signals of many different factors. Complexation of transcription factors and other regulatory proteins is a prevailing and highly conserved mechanism of signal integration within critical regulatory pathways and enable to infer controlled genes as well as the exerted regulatory mechanism. We developed DACO (domain-aware cohesiveness optimization), a novel algorithm that combines...
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  • 14
    DrawWKT

    DrawWKT

    View your WKT geometries

    Small and powerful! Write one or several WKT geometries on the text box, and visualize them in a click. Alternatively, draw the geometries in the drawing panel and you will have the WKT in the text box. You can also write your geometry readers and import your geometries in any format.
    Downloads: 0 This Week
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  • 15
    PatientKAPRecords

    PatientKAPRecords

    KAP evaluation and patient records in radiodiagnostic

    This program tries to help radiologists to keep track of patients which receive radiation doses (measured, or computed, free in air) from radiodiagnostic examinations. It performs computation of KAP (kerma-area-product if it is not recorded by a dedicated DAP-meter) and record the patient information. The program also generates elegant reports which can be converted as pdf, xls etc. Source code included in jar files. Also, available on GitHub: https://github.com/ZiliasTheSaint/PatientRxRecord.git
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  • 16

    mirplant

    miRPlant: An Integrated Tool for Identification of Plant miRNA

    please cite: An J, Lai J, Sajjanhar A, Lehman ML, Nelson CC: miRPlant: an integrated tool for identification of plant miRNA from RNA sequencing data. BMC bioinformatics 2014, 15(1):275. We will create index for you if you tell us your interested plants (j.an@qut.edu.au).
    Downloads: 2 This Week
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  • 17
    JBotSim is a multipurpose dynamic network simulator that allows to quickly prototype a distributed algorithm and test its behavior on a set of static or mobile nodes. If mobile, the nodes can be controlled by the mouse or by program.
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  • 18
    FunctionalCalculator

    FunctionalCalculator

    A functional maths program calculating with functions

    FunctionalCalculator is a Mathematical program, which calculates with functions and which is designed to be functional in the sense of convenience and usability. It has a desktop and a mobile edition. FunctionalCalculator has 75 User-Functions and logical / comparison operators (70 in the case of the mobile edition). The User-Functions can have arguments given by matrices, infinitely differentiable functions, complex numbers or arbitrary precision integers. Among the User-Functions you...
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  • 19
    X-RIME is a open source project devoted to provide Hadoop based solution for large scale social network analysis.
    Downloads: 0 This Week
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  • 20
    Effectopedia
    Effectopedia is open knowledge aggregation and collaboration tool that provides a means of describing adverse outcome pathways in encyclopedic manner.
    Downloads: 1 This Week
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  • 21
    seqMINER
    A genome wide mapping data interpretation platform for NGS(ChIPSeq). A tutorial can be found at: http://genomeast.igbmc.fr/wiki/doku.php?id=training:seqminer
    Downloads: 0 This Week
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  • 22

    Fudaa

    https://gitlab.com/fudaa

    Official site: https://fudaa-project.atlassian.net/wiki/spaces/FUDAA/overview Sources moved to GitLab: https://gitlab.com/fudaa
    Downloads: 10 This Week
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  • 23
    Mavscript

    Mavscript

    Calculations in a text document

    Mavscript allows the user to do calculations in a text document. Plain text, LaTeX and OpenOffice Writer files (.odt) are supported. The calculation is done by the algebra system Yacas (default), Jasymca or by the Java interpreter BeanShell.
    Downloads: 0 This Week
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  • 24
    Numerics for Chemical Engineering

    Numerics for Chemical Engineering

    Numerical models for chemical and process engineering

    NCE Calculation Framework is a library of routines, models and data applicable to chemical and process engineering calculations, written in Java. -- NEW -- www.chesolver.com *ONLINE CALCULATORS*. A set of solvers to perform calculations consistently on any device, from smart-phone to desktop. The project includes the following ready to use software all based on the same core library: * Online Calculators at www.chesolver.com * Extensions for Libreoffice/Openoffice Calc spreadsheet: - NCE: https://extensions.libreoffice.org/extensions/nce - NCE-Units: https://extensions.libreoffice.org/extensions/nce-units Check out also our video channel: https://www.youtube.com/channel/UCt2EGdw33k2u19PnZAi8YJA
    Downloads: 0 This Week
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  • 25
    Active Intelligence Server

    Active Intelligence Server

    Reporting, Dashboarding, Analytic, Self-service BI, Ad-hoc reporting

    Active Intelligence Server 2 (AIS) is a data visualization tool and fully featured reporting server which enable users from open source community to host any reports created using BIRT, Jasper and Pentaho community edition allowing organization to leverage open source technologies and enable them to use AIS as a reporting server to deploy their existing and new reports seamlessly onto AIS for secure sharing the information in different file formats and schedule to make system automation and...
    Downloads: 0 This Week
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