Search Results for "genetic algorithm java" - Page 2
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Showing 647 open source projects for "genetic algorithm java"
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miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
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Advanced Trigonometry Calculator
Precision Trigonometry: Advanced Calculator for Complex Math
Advanced Trigonometry Calculator is equipped with a user-friendly interface that allows for easy input of problems and instant computation. Professionals such as engineers who need to perform advanced trigonometric calculations in their work will find this tool extremely useful. More info by clicking below: https://advantrigoncalc.sourceforge.io/ Advanced Trigonometry Calculator was only and always only developed by the Portuguese Renato Alexandre dos Santos Freitas. Also author of... -
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Credit Card Vault
Just an app I developed for my university course
Credit Card Vault is a simple app that allows you to store the credit card information encrypted with the 3DES encryption algorithm in CBC mode on an Android device. I originally developed this app for my university course, but I also decided to post it on GitHub on Sourceforge. This application is made for educational purposes only. Despite having well-functioning cryptographic features, it may not be reliable. This application is provided with no warranty or guarantees of any kind. Use... -
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The Art of Programming
A collection of practical tips can be found at the bottom of this page
The Art of Programming (Second Edition) is a curated collection of programming problems and solutions originally derived from the Microsoft 100 Interview Questions blog series, later refined into a long-running tutorial and ultimately a published book. Created by July, the series began in 2010 and has since evolved into an in-depth exploration of algorithmic thinking, data structures, and coding interview preparation. The repository brings together 42 classic programming problems from the... -
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Jadecy
Java lib to compute (code) deps, SCCs, and cycles (Johnson algorithm).
Jadecy (Java Dependencies and Cycles) is a Java library to compute dependencies (elements depended on, or depending), strongly connected components, and cycles, in general directed graphs, or classes or packages dependencies graphs parsed from class files (major version <= 52, else does best effort). It uses Tarjan's algorithm for SCCs computation, and Johnson's algorithm for exhaustive cycles computation, with continuations instead of recursion, which allows to handle large graphs (< 2^31 vertices). ... -
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Tree Visualisation with Visual Cues
Tree Visualisation with Visual Cues
This project extends a previous work on node link tree visualisation and interaction by providing visual clues on hidden structures. We adopt DOITree from Prefuse package (https://github.com/prefuse/Prefuse), a multi-focal tree layout algorithm, for exploring large hierarchical structures. Related publications: https://www.sciencedirect.com/science/article/pii/S1045926X1630009X https://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=6902871 -
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BD-Func
Bidirectional Functional Enrichment of Gene Expression Data
BD-Func is an algorithm to predict activation or inhibition of pathways based upon gene expression patterns. If you use BD-Func, please cite: Warden C, Kanaya N, Chen S, and Yuan Y-C. (2013) BD-Func: A Streamlined Algorithm for Predicting Activation and Inhibition of Pathways. peerJ, 1:e159 -
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AcoPath for Java
Ant Colony Optimization algorithm for the shortest path problem.
The shortest path problem is solved by many methods. Heuristics offer lower complexity in expense of accuracy. There are many use cases where the lower accuracy is acceptable in return of lower consumption of computing resources. The basic idea of the Ant System is that virtual ants are exploited for finding paths with a specific property, e.g., short distance between physical nodes, in the same way nature guides physical ants. -
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sRNAWorkbench
The UEA sRNA Workbench
A suite of tools for analysing small RNA (sRNA) data from Next Generation Sequencing devices. Including expression profiling of known mirco RNA (miRNA), identification of novel miRNA in deep-sequencing data and identification of other interesting landmarks within high-throughput genetic data -
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MolMarker
Java software to evaluate the results obtained by molecular markers
Journal article to cite: Jahnke, G.; Smidla, J.; Poczai, P. MolMarker: A Simple Tool for DNA Fingerprinting Studies and Polymorphic Information Content Calculation. Diversity 2022, 14, 497. https://doi.org/10.3390/d14060497 Leave a review, please! Your opinion matters! :-) MolMarker is user-friendly software to help evaluate the research results obtained by molecular markers. The software can handle genetic (e.g. SSR) and biochemical (e.g. isozyme) data, can construct similarity... -
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JQM Java Quine McCluskey
JQM - Java Quine McCluskey for minimization of Boolean functions.
Java Quine McCluskey implements the Quine McCluskey algorithm with Petrick’s Method (or the method of prime implicants) for minimization of Boolean functions. This software can be used both for learning and solving real problems. As a learning/teaching tool, it presents not only the results but also how the problem was solved as well as how to use Karnaugh Maps to solve the problem. -
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NtrUtil
A command line interface for encryption and decryption using the NTRU
A command line interface for encryption and decryption using the NTRU cryptography algorithm. "NTRU is a public key cryptosystem that is considered unbreakable even with quantum computers. Commonly used cryptosystems like RSA or ECC, on the other hand, will be broken if and when quantum computers become available."-NTRU -
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LeetCode Animation
Demonstrate all the questions on LeetCode in the form of animation
LeetCodeAnimation is an educational open source project by MisterBooo that visually demonstrates algorithm problems from LeetCode through animations. The goal of the project is to help learners understand complex algorithmic concepts intuitively by showing step-by-step animated explanations instead of relying solely on static code or text. Each animation corresponds to a specific problem and illustrates how data structures and algorithms operate dynamically, making it easier to grasp their... -
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JQuickBase
elementary database files for Java, B+ tree index files, ISAM
Java API to realize quick ISAM (Index Sequential Access Method) functionality for application in the file system. Includes scalable database files w/ space recovery and variable record length, scalable B+Tree index files. Supports file backup and restore. Two package types: one with and one without strong file encryption using Twofish algorithm and state-of-the-art encryption technology. -
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TengineKit
TengineKit - Free, Fast, Easy, Real-Time Face Detection
Free, Fast, Easy, Real-Time Face Detection & Face Landmarks & Face Attributes & Hand Detection & Hand Landmarks & Body Detection & Body Landmarks & Iris Landmarks & Yolov5 SDK On Mobile. TengineKit is an easy-to-integrate AI algorithm SDK. At present, it can run on various mobile phones at very low latency. We will continue to update this project for better results and better performance! -
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S-DES Crypto App
Encryption/Decryption demonstration app using the S-DES algorithm
Encryption/Decryption demonstration app using the S-DES algorithm. Use the Java runtime environment 11 for execution. The GUI pops up that allows entering a 10-bit encryption/decryption key in binary (0, 1 digits) and the plaintext/ciphertext in the same form (8-bit). Executing the algorithm, decription of the encoding/decoding functionality is provided in the three main text boxes. -
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GenoCline
GenoCline is a free Java software for genetic cline analysis
Identification of clines from allele frequency or genome-wide databases. Angular transformation. Sigmoid function. Parameterization of a cline: orientation, Pearson’s product-moment correlation coefficient, linear and sigmoid regression and coefficient of determination. Graphical representation of the cline. Confidence limits. Spatial autocorrelation. Moran's index. Isolation by distance. Exponential regression. Correlation Fst/Distance. Centroid method. Cline's expected vs. predicted... -
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BifurcumLib
A library for running through a directional graph.
This is the library for the project Bifurcum. It does all the work. It has a simple algorithm (Deep First Search with modifications) and allows sorting children before traversing. This library sums up the authors 4-years experience when programming a commercial tool for graph traversing (which used a much more advanced algorithm) and coaching its users. -
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Bifurcum
Software to run through a directional graph.
This software runs through a directional graph and writes the paths it found as test specifications. It has a simple algorithm (Deep First Search with modifications) and allows sorting children before traversing. This application sums up the authors 4-years experience when programming a commercial tool for graph traversing (which used a much more advanced algorithm) and coaching its users. Technically it is a front end for the library Bifurcumlib. -
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FinalCrypt
FinalCrypt - Unbreakable One-Time Pad Encryption
Why FinalCrypt? 1. Most people choose Disk-Encryption as it's easier to unlock a whole drive, but Big-Brother or Malware can then also read all your files. Only use File-Encryption! 2. Most software uses recently broken AES encryption. 3. Soon The Shor's algorithm will instantly break all assymmetric encryption with Quantum Computers. 4. FinalCrypt uses Symmetric One Time Pad Encryption, which is the most unbreakable encryption there is. 5. FinalCrypt is the only "One Time... -
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Soma-direct
System Omnichannel Marketing Analysis
Soma - System Omnichannel Marketing Analysis is an open-source solution for simplifying the processes of analyzing and predicting consumer behavior. With Soma, you can combine data from multiple systems and channels in the profile joining process. Interactions and behaviors registered as a part of a unique user create and show what a Customer Journey looks like. The data is subjected to an analysis process which enables the examination of the significance of individual touchpoints for the... -
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Ank Zipper
A free and easy-to-use password protected file archiver
Ank Zipper provides you with a lightweight, Java-based application designed to provide security to your documents. Ank Zipper can compress both files and folders and create password-protected archives, in order to prevent unauthorized access to important files. Additionally, it can be used for extracting or simply browsing ZIP files.It includes AES(Advanced Encryption Standard) algorithm to encrypt/decrypt file(s). -
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java-string-similarity
Implementation of various string similarity and distance algorithms
Implementation of various string similarity and distance algorithms: Levenshtein, Jaro-winkler, n-Gram, Q-Gram, Jaccard index, Longest Common Subsequence edit distance, cosine similarity. A library implementing different string similarity and distance measures. A dozen of algorithms (including Levenshtein edit distance and sibblings, Jaro-Winkler, Longest Common Subsequence, cosine similarity etc.) are currently implemented. The main characteristics of each implemented algorithm are... -
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LoopMatcher
Find sequence-specific stem-loops in FASTA and GenBank files.
LoopMatcher is a bioinformatics tool that searches for hairpin structures in cDNA / mRNA sequences (in FASTA, GenBank or Vienna format) with specific consensus sequences in the loop. It uses RNAfold to predict sequence structure and UShuffle to generate random sequences with a defined k nucleotide frequency. Also, sequences in GenBank format can be downloaded directly from NCBI using the NCBI access ID. Requirements JAVA Runtime 8. It's highly recommended to have a multicore processor... -
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Seshat Naming and Balancing Service
Extended COS Naming and Balancing Service
The Seshat Extended Naming and Balancing Service supplies a fully conformant COS Naming Service with extensions allowing you to store any serialized object in the naming tree. The Service also supplies a Balancer for session balancing multiple CORBA servants of the same type in balanced groups. The balanced groups can be bound to the naming tree. If you look up a balanced group you will transparently get a reference to an object in the group. The members of a group can be delivered either...
