Search Results for "gnu science" - Page 16
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Showing 3193 open source projects for "gnu science"
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Vianto
Video Annotation Tool
See https://sourceforge.net/p/vianto/wiki/ for version features and feature requests. Vianto is a Java-based video annotation / coding tool with graphical user interface that allows you to: - Record video (in OSX only) - Save and load markers to code the video with (timestamps automatically generated for events) - Double click on events and the video will jump to the right place in the video - Click a marker to select start time, click again to set end time of code or preset a... -
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JNode is a Java New Operating system Design Effort. JNode is a simple to use and install Java operating system for personal use on modern devices. Any java application runs on it, fast and safe. See our homepage for additional information.
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GSA-SNP is a gene set analysis software that can process SNP data as well as gene and haplotype data.
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A Java interface and implementation for the W3C Web Ontology Language (OWL), used to represent Semantic Web ontologies. The API is focused towards OWL 2 and offers an interface to inference engines and validation functionality.
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Analyze My Genes
Compare gene analysis results from 23andme with the human genome
This program compares personal gene analysis results from 23andme with extracted databases from the human genome project. An typical example of an extracted database is a dataset which contains all alternative alleles which occur less than 1% of the time. -
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Java implementation of John Platt's Sequential Minimal optimization algorithm. This is an efficent Support Vector Machine solution.
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Generic directory service (for the EPICS tool set). Directory entries are channels with properties and tags. Applications can query a web service to retrieve channels based on wildcard matching on properties and tags, and manipulate the directory data. Code has been moved to GitHub at https://github.com/ChannelFinder
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ArtificialFastqGenerator
Ouputs artificial FASTQ files derived from a reference genome.
ArtificialFastqGenerator takes the reference genome (in FASTA format) as input and outputs artificial FASTQ files in the Sanger format. It can accept Phred base quality scores from existing FASTQ files, and use them to simulate sequencing errors. Since the artificial FASTQs are derived from the reference genome, the reference genome provides a gold-standard for calling variants (Single Nucleotide Polymorphisms (SNPs) and insertions and deletions (indels)). This enables evaluation of a Next... -
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GMOD is a set of interoperable open source software components for visualizing, annotating, and managing biological data. See http://gmod.org for more.
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CRAFT HPC Floating-point Analysis
CRAFT: Configurable Runtime Analysis for Floating-point Tuning
CRAFT (Configurable Runtime Analysis for Floating-point Tuning) for HPC (High-Performance Computing) uses binary instrumentation to perform runtime analysis of floating-point code, detecting cancellations and making precision level recommendations. NOTE: THIS PROJECT HAS MOVED TO GITHUB!!!! https://github.com/crafthpc/craft -
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The JTS Topology Suite is an API for modelling and manipulating 2-dimensional linear geometry. It provides numerous geometric predicates and functions. JTS conforms to the Simple Features Specification for SQL published by the Open GIS Consortium.
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The Maude Development Tools are a set of plugins that embed the maude interpreter (http://maude.cs.uiuc.edu) in Eclipse. It provides a core plugin, which allows to any Java program to use Maude, and a set of plugins which provide an Eclipse-based IDE
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GUITAR - A GUI Testing Framework
A model-based test automation framework for GUI applications
This framework supports a wide variety of model-based GUI testing techniques. The innovation lies in the architecture of GUITAR, which uses plug-ins to support flexibility and extensibility. Software developers and quality assurance engineers may use this architecture to create new toolchains, new workflows based on the toolchains, and plug in a variety of measurement tools to conduct GUI testing. More detail is presented in this publication: GUITAR: An Innovative Tool for Automated... -
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Collaborative infrastructure for Collaborative Product Development (manufacturing) within Extended and Virtual Enterprise.
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Arezzo is an emulator of a Flexible Manufacturing System (FMS) usable with the "Bench4star" benchmark.
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Systems Biology Simulation Core Library
Accurate and efficient Java library that simulates biological models
This project has been moved to https://github.com/draeger-lab/SBSCL. -
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MyOscar is a personal health record system. This project contains both the data storage server as well as a client / patient UI for accessing the data. Other data access clients can be / have been written, the Oscar EMR is one such client. The sourceforge myoscar-users@lists.sourceforge.net is the main mail list and form of communications for this project. The sourceforge Tickets system is the bug and feature tracker for this project. The sourceforge git repository is not the...
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physicsmata
API for all possible cellular automata that work same at all angles
Its strange how the "sorted pointers" normalizing makes just about any random function, as long as it connects the inputs to the outputs on some path, vibrate as some nonlinear shape of wave. This could be used as a game interface for evolvable musical instruments or fluid puzzle games. Physicsmata is similar in effect to SmoothLife but simpler and pure Java. The cellular automata API takes a function to run at each point. Its parameters are sums of screen brightness (n color dimensions are... -
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Ganib | Project Management Software
Open Source, tasks, bug tracking, agile scrum, timesheet, wiki
Ganib gives simpler ways to keep your projects organized and on track. Take advantage of easy features that help you quickstart and makes your team more efficient and productive. Open source Web based online agile project management collaboration software free, J2EE platform, MySql database with project dashboards & reporting. Organized Teams & Projects: Easily plan & manage projects with intuitive features to help your team deliver on time. Quickly focus on what's important, easily... -
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JDeva
java framwork for processing raw data
a framework for processing different input sources like files, databases, streams unsing JPA-like annotations -
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We have implemented a core summarizer of scientific articles written in Spanish, with the following components: a tokenizer, a grammar checker, a clarity checker, a cohesion-coherence checker, a common-topic extractor and an output formatter.
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Jolie
A service-oriented programming language.
**Note** that releases are outdated on sourceforge. Please refer to our main website: www.jolie-lang.org Jolie is the first full-fledged programming language based upon the service-oriented paradigm, suitable to create new services from scratch or to compose existing ones in powerful orchestrators in order to obtain new functionalities. You can use Jolie for building any kind of distributed applications. Examples are cloud middleware, web portals, and standalone concurrent applications. -
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This site contains four packages of Mass and mass-based density estimation. 1. The first package is about the basic mass estimation (including one-dimensional mass estimation and Half-Space Tree based multi-dimensional mass estimation). This packages contains the necessary codes to run on MATLAB. 2. The second package includes source and object files of DEMass-DBSCAN to be used with the WEKA system. 3. The third package DEMassBayes includes the source and object files of a Bayesian...
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OptFerm
A computational platform to study fermentation processes
OptFerm is a computational platform for the simulation and optimization of fermentation processes. The aim of this project is to offer a platform-independent, user-friendly, open-source and extensible environment for Bioengineering process optimization that can be used to increase productivity. This tool is focused in optimizing a feeding trajectory to be fed into a fed-batch bioreactor and to calculate the best concentration of nutrients to initiate the fermentation. Also, contains a... -
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Argunet
argument map editor for analyzing and visualizing complex debates
Argunet is a client-server software for computer-supported argument visualization (CSAV). Reconstructed debates are visualized as argument maps and can be shared through the Argunet Server.
