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UJAC is a collection of Java components that may be useful for your project. It provides a powerful expression interpreter, a iText based document processing engine that generates PDF documents based on XML templates, a charting library and much more.
A Java implementation of XProc: An XML Pipeline Language
This project is now abandoned in favour of MorganaXProc-III which implements XProc 3.0: https://sourceforge.net/projects/morganaxproc-iiise/
MorganaXProc is a full implementation of XProc: An XML Pipeline Language (W3C Recommendation 11 May 2010) written in Java, supporting all required and optional steps, the steps proposed on EXProc.org and also the document templating steps "p:in-scope-names" and "p:template".
XPath 2.0 or XPath 3.0 is used as expression language.
XSLT and XQuery...
"xmlsh" is derived from the design and goals the unix shell and core commands but with XML expressions and documents added as core features to the shell. xmlsh can be used as a drop-in replacement for scripting xml transformations instead of sh.
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Lightweight XML processor; XML-POJO mapping via Java5 annotations or DTD; Preprocessing of XML documents using expression language; Binary XML; RMI friendly XML; JSON format support; XML marshall/unmarshall; HTML as XML parser; Swing XML Viewer
No Latte is an interpreter for a variation of the Latte language (cf. http://www.latte.org/) for writing XHTML documents in a functional-programming style---LaTeX sensibilities with LISP semantics.
XVCL is a general-purpose language for configuring variants in all sorts of textual documents (including programs). It is based on frame technology. XVCL processor automates the customization process to produce system from specification of variants.