Search Results for "graphs"

FastQC is a quality control analysis tool designed to spot potential problems in high throughput sequencing datasets. Its goal is to provide a simple way by which to check the quality of raw sequence data coming from high throughput sequencing pipelines. It does this by running a modular set of analyses on one or more raw sequence files in fastq or bam format. It then produces a report summarizing the results, and highlighting any areas where the library may appear unusual. This should then...

This is a framework used to decompose hierarchical graphs, i.e.,graphs which were created from or contain a hierarchy of modules. Each module is reused several times in the hierarchy. This may be useful to reverse-engineer human constructs like electronic equipment, manufactured machines, or bureaucratic hierarchies; but also to decompose natural constructs like gene-relation or protein-relation nets.

...Its purpose is for creating NLP tools like phrase chunkers, named entity finders, pronoun co-reference solvers etc. A grammar is represented by a state machine which can be visualized, edited and applied. A grammar is organized in graphs of nodes. Nodes are used for consuming words from the input, for executing jumps to other graphs in the grammar or for creating annotations etc. GGS has a unique feature: It allows the user to write JavaScript code to be executed for nodes of the grammar. This is useful for checking grammatical agreements but not only. The user can: declare variables (including complex js structures), check for boolean conditions, use variables in annotations etc.

MuLaViTo is a multi-layer visualization framework which allows to visualize relations between multiple graphs in derived applications. Moreover, it provides helpful means like k-shortest path algorithms, running algorithms in a separate thread, ...

This is a project regarding parsing data from different(general) sources and representing it in form of graphs.

AlViz is a research prototype for visual ontology alignment implemented as multiple-view plug-in for Protege using J-Trees and Graphs. Based on similarity measures of an ontology matching algorithm AlViz helps to assess and optimize the alignment results

...While your application is computing and logging results to a CSV file using the LiveGraph Writer API, the plotter lets you visualise and monitor the results live - by instantly plotting charts and graphs of the data.

Docgen plugin for Protege provides a quick export of all the content of an ontology (classes, instances and documentation) in various formats (html, pdf, fo...). Images, Graphs, URL are readyly included in reports.

Java visual aplication to show graphs. JWykres get data from dabases by jdbc. Aplication can show many dataset on one graph for easy comparison, for example to find interrelation beetwen processes or finding trends.

An open source program that has the ability to graph data collected from scientific experiments. It will fit a variety of linear and non-linear regressions to data and will have the ability to save and print graphs.

AbuGraph is a freely available Java application for the layout and visualization of directed graphs. Bound to a TCP port, it supports dynamic graph creation receiving commands from a telnet console or another third party application.

Bitnets instantiates and operates on graphs and subgraphs of large complex networks, such as kinship networks. Bitnets consists mainly of a java library, a number of use examples and an interactive interpreted language interface.

Digital graph 1.3 is an advanced JAVA SWING component for modelling, displaying, saving and loading graphs(using XML and XMLSchema). It is fully documented and requires jdk 1.5.x.Version 1.3 adds 9 bug fixs, 3 rengineering and 4 new features.

MicroArray Genome Imaging and Clustering Tool (MAGIC tool) is a platform-independant java program for analyzing MicroArray data (.tiff scans & .txt godlists) via graphs and clustering operations (including QT-clustering). http://www.bio.davidson.edu/magic

MMOpenGraph is a set of JAVA-Classes to represent graphs within java. It can load and save graphs to serialized or text-based files and analyze graphs to find shortest paths.

A Java package to read and manipulate graphs in the GXL (Graph eXchange Language) format, as well as providing a GXL graph editor. Note from admin: This project is discontinued, send me a message if you want to take over.

A rather simple java program for parsing plain text files (generally in large numbers), which should then offer frequency statistics of usage, graphs, full-text search and maybe something more.