Open Source Information Analysis Software - Page 4

miRDeep-P2 (miRDP2) is developed to accurately and fast analyze microRNAs (miRNAs) transcriptome in plants. It is adopted from miRDeep-P (miRDP) with new strategies and overhauled algorithm. We have tested miRDP2 to analyze miRNA transcriptomes in such plants with gradually increased genome size as Arabidopsis, rice, tomato, maize and wheat. Compared with miRDeep-P and several other computational tools, miRDP2 processed NGS data with superior speed. By incorporating newly updated plant miRNA annotation criteria, the accuracy of miRDP2 is also markedly improved. Our results demonstrate miRDP2 as a fast and accurate tool for analyzing the miRNA transcriptome in plants. Reference: https://doi.org/10.1093/bioinformatics/bty972

A windrose, also know as polar rose plot, is a special diagram for representing the distribution of meteorological datas, typically wind speeds by class and direction.

This package is a collection of libraries, data processing filters, and UI applications to aid in the analysis and visualization of scientific data stored in the Radar Data Format.

MultiBoost is a C++ implementation of the multi-class AdaBoost algorithm. AdaBoost is a powerful meta-learning algorithm commonly used in machine learning. The code is well documented and easy to extend, especially for adding new weak learners.

Xplico is a Network Forensic Analysis Tool (NFAT). The goal of Xplico is extract from an internet traffic capture the applications data contained. For example, from a pcap file Xplico extracts each email (POP, IMAP, and SMTP protocols), all HTTP contents, each VoIP call (SIP, MGCP, MEGACO, RTP), IRC, WhatsApp... Xplico is able to classify more than 140 (application) protocols. Xplico cam be used as sniffer-decoder if used in "live mode" or in conjunction with netsniff-ng. Xplico is used also in CapAnalysis: http://www.capanalysis.net

DIVA-GIS is a geographical information system to analyze plant biodiversity data. It was developed at the International Potato Center (CIP) to help curate it's genebank data; additional support was subsequently obtained from IPGRI.

RHINO parses Korean words by morpheme and part-of-speech. Its dictionaries are based on Korean Modern Tagged Corpus(12 million phrases scale) which was made by Korean government. So it analyses many cases of stems and endings. And the newly developed Dynamic Dictionary Technology can make words to react with their context. That is, a programmed database. For more information see the files in the help folder.

TXM is a free and open-source cross-platform Unicode & XML based text analysis environment and graphical client, supporting Windows, Linux and Mac OS X. It can also be used online as a J2EE standard compliant web portal (GWT based) with access control built in. DOWNLOAD LATEST VERSION OF TXM : http://textometrie.ens-lyon.fr/spip.php?rubrique61&lang=en TXM offers a comprehensive range of analysis tools (concordances, collocate search, frequency lists, etc.) based on the powerfull CQP full text search engine (http://cwb.sourceforge.net) and a range of statistical functions (factorial analysis, classification, cooccurrency analysis, etc.) based on R packages (http://www.r-project.org). Read the scientific background at the Textométrie project web site http://textometrie.ens-lyon.fr/?lang=en. Read a full description at the TEI Tools wiki http://wiki.tei-c.org/index.php/TXM.

The Modular toolkit for Data Processing (MDP) is a Python data processing framework. From the user's perspective, MDP is a collection of supervised and unsupervised learning algorithms and other data processing units that can be combined into data processing sequences and more complex feed-forward network architectures. From the scientific developer's perspective, MDP is a modular framework, which can easily be expanded. The implementation of new algorithms is easy and intuitive. The new implemented units are then automatically integrated with the rest of the library. The base of available algorithms is steadily increasing and includes signal processing methods (Principal Component Analysis, Independent Component Analysis, Slow Feature Analysis), manifold learning methods ([Hessian] Locally Linear Embedding), several classifiers, probabilistic methods (Factor Analysis, RBM), data pre-processing methods, and many others.

Thea, Tools for High-throughput Experiment Analysis, is an integrated information processing system dedicated to the annotation of data issued from classification systems with biological information coming from a knowledge base.

You can install the latest Eclipse plugin version from the update site https://javahexeditor.sourceforge.io/update or the Eclipse Marketplace https://marketplace.eclipse.org/content/java-hex-editor. Older versions of the Eclipse plugin are available via the update site for the version, e.g. https://javahexeditor.sourceforge.io/update/0.5.1 You can download the latest stand-alone version and older versions on the "Files" tab.

This is a Matlab software package for single molecule FRET data analysis.

PyPedal is a Python module that provides tools for the manipulation of pedigrees, simple visualization of pedigrees, and the calculation of measures of genetic diversity from pedigrees.

Scaffold Hunter is a JAVA-based software tool for the analysis of structure-related biochemical data. It enables generation of and navigation in a scaffold tree hierarchy annotated with various data.

Custom add-in (MDG technology) for Sparx Systems Enterprise Architect UML modelling tool (https://sparxsystems.com/products/ea/index.html) to create architecture descriptions using TRAK https://sf.net/projects/trak Provides: - the set of TRAK views that can be represented using UML and SysML . Each view display a custom toolbox palette with the objects and relationships that are needed for that TRAK view - relationships can be made directly from the objects on a view using the Quicklink feature which presents the allowed relationship(s) by TRAK between the pair of objects selected - a custom set of searches. When run these will list objects of a particular type (e.g. all Systems, all Enterprise Goals), potential quality problems (e.g. diagrams and objects without any description, objects not linked to any other), things of interest (e.g. open, closed concerns) and view-like results e.g. all structural relationships in the solution - model views to list object

Source code from the Research Institute for Signals, Systems and Computational Intelligence http://fich.unl.edu.ar/sinc

The UIMA Annotator (called BRUTUS - Business Rules from Unstructured Text and Unstructured Sources) is a component for the UIMA Framework that allows for capturing business knowledge formalized in Structured English syntax (based on OMG's SBVR) with MOF

The Chromensics tool is developed to read all information from chrome browser directory and present it to user, in easy readable tabular format which can be explored in descent interface without running the chrome browser. The tool will also allow you retrieve information from other chrome installation brought from different machine for analyzing. The acquired artifacts can be exported in PDF report to present it in court of law or to superiors. -Update 04/02/2017- Standardized all date formats to YYYY-MM-DD HH:MM:SS Introduced Export to Excel Feature Added several search engines results under "Searches" Several Small bug fixes -Update- Now include debug capacity to generate debug logs. If users face any issue with tool, kindly attach cdb.log generated and send it to us. Fixed Cookie and Password Decryption Bug

Extracts dependencies and OO metrics from Java class files produced by most Java compilers. Computes API differences between versions. No source needed. Includes both Swing and command-line interfaces, with XSL stylesheets for formatting output.

Kst is the fastest real-time large-dataset viewing and plotting tool available and has basic data analysis functionality. Kst contains many powerful built-in features and is expandable with plugins and extensions.

A univariate and multivariate analysis UI. This project is no longer under development. Please use as you wish.

Adele was developed to simplify the daily work with data. Use it as a swiss knife to fill the gap between your work with spreadsheet application like MS Excel and enterprise servers like SAP ERP. Specialized tools like Rapid Miner, KNIME or similiary stuff should not be replaced. But Adele is designed for business people working with spreadsheet applications to analyse their data. There are many technical concepts in an easier way included. For example realtime OLAP, transformations, charts, analysis tools,... Connectors (e.g. JDBC, SAP ABAP, OData) can be used to pre-analyse the data and extract it without saving the data as text files. A plugin concept for enhancements are available. Enjoy! Its free for commercial use too. Adele runs without installation from USB stick for Windows, Linux and MacOSX. Last added changes: - data science tools (V1, IQR) - export to remote and desktop databases (mysql,sqlite, ms access) - internet features for emails and domains

FTimes is a forensic system baselining, searching, and evidence collection tool. Its primary purpose is to gather and/or develop topographical information and attributes about specified directories and files in a manner conducive to intrusion and forensic analysis.

Augustus development has moved to google code. The new project page is augustus.googlecode.com. New releases of the project are not currently being released to sourceforge. Augustus is designed for statistical and data mining models and produces and consumes models with 10,000s of segments. Versions of Augustus support PMML 3, 4.0.1, and 4.1.

The Coding Analysis Toolkit (or "CAT") consists of a ASP.NET based suite of tools to facilitate efficient and effective analysis of text datasets that have been coded using the CAT coding module or ATLAS.ti.