Search Results for "general morphological analysis"
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Showing 29 open source projects for "general morphological analysis"
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libvips
A fast image processing library with low memory needs
libvips is a demand-driven, horizontally threaded image processing library. Compared to similar libraries, libvips runs quickly and uses little memory. libvips is licensed under the LGPL 2.1+. It has around 300 operations covering arithmetic, histograms, convolution, morphological operations, frequency filtering, colour, resampling, statistics and others. It supports a large range of numeric types, from 8-bit int to 128-bit complex. Images can have any number of bands. It supports a good... -
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SimpleITK
A layer built on top of the Insight Toolkit (ITK)
SimpleITK is an image analysis toolkit with a large number of components supporting general filtering operations, image segmentation and registration. It is built on top of the Insight Segmentation and Registration Toolkit ITK with the intent of providing a simplified interface to ITK. SimpleITK itself is written in C++ but is available for a large number of programming languages. -
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ProStack
ProStack - a platform for image processing and analysis
ProStack - a platform for image processing and analysis. It implements various image processing methods as separate modules, that can be joined in a complex image processing scenario by use of a graphical user interface. RPMs are available at https://build.opensuse.org/project/repositories/home:mackoel:compbio -
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NEtCAT NanoSurface Analyzer
NanoSurface Analyzertool is designed for the STM image analysis
NanoSurface Analyzer tool is designed for the analysis and measurement of surface data at the nanoscale. This application is developed to support researchers working with surface data by providing tools for reading, processing, and analyzing data. -
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ANDTool
Analysis Nuclei DAB (AND) Tool
Analysis Nuclei DAB (AND) Tool is a Graphical User Interface (GUI) to analyse microscopy images representing cells with nuclei stained using DAB dyes. The tool requires as input the original RGB images, and the FastRed, FastBlue, DAB channel, easily obtained using the Fiji function: "ImageJ" -> "Image" -> "Colour Deconvolution" -> "FastRed FastBlue DAB" Then, the tool first segment the nuclei using the FastBlue channel and the DAB channel, and then computes statistics by subdividing... -
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LTI-Lib is an object oriented computer vision library written in C++ for Windows/MS-VC++ and Linux/gcc. It provides lots of functionality to solve mathematical problems, many image processing algorithms, some classification tools and much more...
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AwesomeBump
Open Source graphic tool and alternative to Insane Bump
AwesomeBump is a free and open source graphic app written using Qt library. It was made as an alternative to known gimp plugin Insane Bump or the commercial tool Crazy Bump. It is designed to generate normal, height, specular or ambient occlusion, metallic, roughness and other textures from a single image. Most of the image processing is done on GPU so the program runs very fast and all the parameters can be changed in real time. -
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CognitionMaster
object-based image analysis framework
Wienert S, Heim D, Kotani M, Lindequist B, Stenzinger A, Ishii M, Hufnagl P, Beil M, Dietel M, Denkert C, Klauschen F. CognitionMaster: an object-based image analysis framework. Diagn Pathol 2013, 8:34 -
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Scilab Image Processing Toolbox
Advanced image processing toolbox for Scilab on Unix/Linux/Mac OS
SIP is the image processing and computer vision package for SciLab, a free Matlab-like programming environment. SIP reads/writes images in formats like JPEG, PNG, and BMP. It does filtering, segmentation, edge detection, morphology, and shape analysis. Download from Git http://siptoolbox.sourceforge.net/devel -
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Marvin is an image processing framework that provides features for image and video frame manipulation, multithreading image processing, image filtering and analysis, unit testing, performance analysis and addition of new features via plug-in.
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Animal is AN IMAging Library written in C. Its simple API supports over 80 image formats, and is intended to make massive use of other image processing libraries. Animal aims at image analysis and recognition. It is mainly the C basis of the SIP toolbox.
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MORPHE
MORphological PHenotype Extraction
MORphological PHenotype Extraction (MORPHE) is a suite of automated image processing, visualization, and classification algorithms to facilitate the analysis of heritable and clonal red-to-green transitions that occurred during the growth of a colony. -
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libcrn is document image processing library written in C++11 for Linux, Windows, Mac OsX and Google Android. It is a toolbox that allows to create easily software such as OCRs and layout analysis tools.
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Tigris is an open source suite of classes and programs implemented in C++ for single particle electron microscopic image processing.
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Orfeo ToolBox
OTB is an open-source C++ library for remote sensing images processing
...More information is available at www.orfeo-toolbox.org It is based on the medical image processing library ITK and offers particular functionalities for remote sensing image processing in general and for high spatial resolution images in particular. Targeted algorithms for high resolution optical images (SPOT, Quickbird, Worldview, Landsat, Ikonos), hyperspectral sensors (Hyperion) or SAR (TerraSarX, ERS, Palsar) are available. Orfeo ToolBox has three main access depending on the category of user: write processing chains in C++ using existing filters or creating new ones, use the OTB applications, which is a plugin-based framework allowing to extend high-level processing chains from various environment ( command-line, QT, QGis, Python....) or use Monteverdi, a software for everyday life image manipulation and analysis. -
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RootAnalyzer
A cross-section image analysis tool
Update: A graphical user interface for RootAnalyzer, along with other root phenotyping tools can now be found at https://sourceforge.net/projects/rootphenotypingsuite/ RootAnalyzer is a fully automated tool, for efficiently extracting and analyzing anatomical traits from root cross section images. Using a range of image processing techniques such as local thresholding and nearest neighbor identification, RootAnalyzer segments the plant root from the image's background, classifies and... -
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This is an Image Processing toolkit written in Java. The source code is intended to help you understand processes such as Color Inversion, Edge Detection, Fourier Transform, Morphological process, Laplacian Sharpening, Gaussian Noise Adding, and hist
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BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.
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LAVA for AFM
Lloyd's Algorithm-based Volumetric Analysis for AFM Images
This MATLAB-based program enables analysis of AFM images. In particular, it allows the user to measure the volume of all distinguishable features in an image and to isolate and sort those particles. As the name implies, LAVA uses Lloyd's Algorithm, also known as k-means sorting, to identify a small set of volumes representative of the actual distribution of particle in the image. Although developed for determining feature volume, LAVA is also completely compatible with other types of... -
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A application with simple image processing functions which are used for medical image analysis / image analysis in general as a part of my academic project. The functions are written from scratch from various image processing algorithms.
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The purpose of this program is to teach a computer to classify plants via their leaves. You just need to input the image of a leaf(acquired from scanner or camera), then the computer can tell you what kind of plant it is.
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JIPL (Java Image Processing Library) is an attempt to provide an efficient way to load, filter, manipulate, and save images. The goal is to provide an intuitive and extensible library.
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LeafAnalyser has been developed as a fast throughput leaf shape analysis application. It contains features such as automated image processing, data analysis and interactive 2D/3D graphs.
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CVSharp (aka Computer Vision in C#) is a Computer Vision project. Until the present day just one part of the whole project was actually developed. It's called CVSharp Lab, an Image Processing Tool.
