Search Results for "analysis"
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Showing 73 open source projects for "analysis"
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SimpleITK
A layer built on top of the Insight Toolkit (ITK)
SimpleITK is an image analysis toolkit with a large number of components supporting general filtering operations, image segmentation and registration. It is built on top of the Insight Segmentation and Registration Toolkit ITK with the intent of providing a simplified interface to ITK. SimpleITK itself is written in C++ but is available for a large number of programming languages. -
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ShinyCardinal
Mass spectrometry imaging data analysis software tool
ShinyCardinal is an open-source and vendor-neutral software that covers all steps in MSI data analysis. It leverages the R package Cardinal to enhance its functionalities by introducing several additional important features, such as the removal of background noises and matrix peaks, deisotoping, absolute quantification, network analysis, and metabolite identification. ShinyCardinal is built as a desktop application with a conveniently designed graphic user interface to provide users a stable, consistent, and user-friendly data analysis framework. ... -
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ProStack
ProStack - a platform for image processing and analysis
ProStack - a platform for image processing and analysis. It implements various image processing methods as separate modules, that can be joined in a complex image processing scenario by use of a graphical user interface. RPMs are available at https://build.opensuse.org/project/repositories/home:mackoel:compbio -
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CT4AM
Tools for 3D image analysis of additively manufactured parts
...You can either execute these tools directly or use their source codes to develop your own application for toolpath analysis or correlation. -
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WingSegment
WingSegment: A tool for Analysis and Modeling of Insect Wings
...The tool utilizes region-growing, thinning, and Dijkstra's algorithms for boundary detection, junction identification, and vein path extraction. It provides histograms and box plots of geometric features, facilitating comprehensive wing analysis. WingSegment's efficiency is validated through comparisons with established tools and manual measurements, demonstrating accurate results. The tool further enables exporting detected boundaries as FreeCAD macro files for 3D modeling and printing, supporting finite element analysis. Beyond advancing insect wing morphology understanding, WingSegment holds broader implications for diverse planar structures, including leaves and geocells. ... -
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NEtCAT NanoSurface Analyzer
NanoSurface Analyzertool is designed for the STM image analysis
NanoSurface Analyzer tool is designed for the analysis and measurement of surface data at the nanoscale. This application is developed to support researchers working with surface data by providing tools for reading, processing, and analyzing data. -
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SMILI
Scientific Visualisation Made Easy
The Simple Medical Imaging Library Interface (SMILI), pronounced 'smilie', is an open-source, light-weight and easy-to-use medical imaging viewer and library for all major operating systems. The main sMILX application features for viewing n-D images, vector images, DICOMs, anonymizing, shape analysis and models/surfaces with easy drag and drop functions. It also features a number of standard processing algorithms for smoothing, thresholding, masking etc. images and models, both with graphical user interfaces and/or via the command-line. See our YouTube channel for tutorial videos via the homepage. The applications are all built out of a uniform user-interface framework that provides a very high level (Qt) interface to powerful image processing and scientific visualisation algorithms from the Insight Toolkit (ITK) and Visualisation Toolkit (VTK). ... -
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QCI_AstroEntangle_Refiner
Quantum Cosmology & Astrophysics Unified Suite (QCAUS)
... 📸 Live Demo The application is deployed on Streamlit Cloud: Live App test now: https://qcuas-quantum-cosmology-astrophysics-unified-suite.streamlit.app/ QCI AstroEntangle Refiner – FDM soliton physics & image processing Magnetar QED Explorer – Magnetar fields, dark photons & vacuum QED Primordial Photon–DarkPhoton Entanglement – Von Neumann evolution in an expanding universe QCIS (Quantum Cosmology Integration Suite) – Quantum‑corrected cosmological perturbations 🔭 Overview These four projects form a complete computational framework for quantum‑inspired astrophysics. Together they enable: Image analysis of galaxy clusters (Abell, Bullet, etc.) using Fuzzy Dark Matter (FDM) soliton overlays. Simulation of magnetar -
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Image Assemble Tool
A powerful tool designed to reconstruct an original image from pieces
Image Assemble Tool is a powerful tool designed to reconstruct an original image from fragmented pieces by analyzing the edge pixels of each piece. The program intelligently determines the correct placement of each fragment to recreate the complete image with precision. With its intuitive interface and efficient algorithms, Image Assemble Tool is an ideal tool for anyone needing to reconstruct images from scattered pieces. Download now and bring your fragmented images back to life! -
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openSkyMatch
Matches OpenScience Observatories images with astronomical catalogs
openSkyMatch is a collection of Linux shell and Python scripts designed for the OpenScience Observatories program. It automates the identification and matching of detected celestial objects in locally captured FITS images with entries in large-scale sky catalogs, notably Pan-STARRS1 DR2 (II/389/ps1_dr2). The toolkit supports data preprocessing, coordinate correlation, and catalog-based validation of astronomical detections. All tools are open-source and optimized for reproducibility and... -
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The Scientific Image Analysis (SIA) software is an image processing application written in MATLAB for scientific analysis of images and video. SIA is designed to be intuitive and easy to use, and is free to download. While SIA is designed to meet the image processing needs of biologists, its functionalities can be used for a wide variety of applications. With SIA, users can calibrate and make single and continuous measurements of length, angle, area and the average color values within a region. ...
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RasterPS
Basic Digital Image Improvement and Processing
...The common Image File Formats are supported. Fundamental Functions like Histogram, Conversion, Point Operations, Filtering, geometric Transformations and Image Analysis are implemented. A basic Image Manager retrieves file attributes from digital images. -
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FibroSoft
Histology staining analysis and quantification tool.
A histology staining analysis and quantification tool based on machine learning. -
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medical image analysis
Libraries and command line tools for medical image processing.
This software provides libraries and command line tools for the processing and analysis of gray scale medical images. -
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ANDTool
Analysis Nuclei DAB (AND) Tool
Analysis Nuclei DAB (AND) Tool is a Graphical User Interface (GUI) to analyse microscopy images representing cells with nuclei stained using DAB dyes. The tool requires as input the original RGB images, and the FastRed, FastBlue, DAB channel, easily obtained using the Fiji function: "ImageJ" -> "Image" -> "Colour Deconvolution" -> "FastRed FastBlue DAB" Then, the tool first segment the nuclei using the FastBlue channel and the DAB channel, and then computes statistics by subdividing the sample in three regions according to the FastRed channel: a dark-red ROI, a light-pink ROI and a white ROI. ... -
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LTI-Lib is an object oriented computer vision library written in C++ for Windows/MS-VC++ and Linux/gcc. It provides lots of functionality to solve mathematical problems, many image processing algorithms, some classification tools and much more...
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AwesomeBump
Open Source graphic tool and alternative to Insane Bump
AwesomeBump is a free and open source graphic app written using Qt library. It was made as an alternative to known gimp plugin Insane Bump or the commercial tool Crazy Bump. It is designed to generate normal, height, specular or ambient occlusion, metallic, roughness and other textures from a single image. Most of the image processing is done on GPU so the program runs very fast and all the parameters can be changed in real time. -
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LaueTools
open source python packages for X-ray MicroLaue Diffraction analysis
LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation. Python 3 Code and new features are now at: https://gitlab.esrf.fr/micha/lauetools -
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cocolib / light field suite
CUDA library for continuous optimization and light field analysis
Library for continuous convex optimization in image analysis, together with a command line tool and Matlab interface. Implements several recent algorithms for inverse problems and image segmentation with total variation regularizers and vectorial multilabel transition costs. Also included is a suite for variational light field analysis, which ties into the HCI light field benchmark set and givens reference implementations for a number of our recently published algorithms. *** NOTE: documentation on the SourceForge page is outdated and not updated anymore, please visit http://cocolib.net *** -
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MIPPY
Modular Image Processing in Python
MIPPY is a minimalistic DICOM image browser with built-in image processing modules. Its modular design means it can be extended with any number of user-created modules for image processing and analysis. -
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LithoGraphX
LithoGraphX, 3D data analysis and visualization
LithoGraphX is an open source software for scientists, by scientists. It aims at providing the plant science community with a solid, open, community developed, software for 3D data analysis and visualization. LithoGraphX is a fork of the MorphoGraphX project. -
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CognitionMaster
object-based image analysis framework
Wienert S, Heim D, Kotani M, Lindequist B, Stenzinger A, Ishii M, Hufnagl P, Beil M, Dietel M, Denkert C, Klauschen F. CognitionMaster: an object-based image analysis framework. Diagn Pathol 2013, 8:34 -
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ucme_compiler
A compiler that automatically generates parallel code
This compiler automatically generates C++, CUDA, MPI, or CUDA/MPI code for parallel processing. The idea is to require only minimal end user knowledge of how the underlying code works. It was originally intended for numerical analysis work, but it also is very applicable for image processing. -
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Scilab Image Processing Toolbox
Advanced image processing toolbox for Scilab on Unix/Linux/Mac OS
SIP is the image processing and computer vision package for SciLab, a free Matlab-like programming environment. SIP reads/writes images in formats like JPEG, PNG, and BMP. It does filtering, segmentation, edge detection, morphology, and shape analysis. Download from Git http://siptoolbox.sourceforge.net/devel -
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cbrTekStraktor
an application to automatically extract text from comic books.
cbrTekStraktor is an application to automatically extract text from the text bubbles or speech balloons present in comic book reader files (CBR). Its prime goal is to perform analysis on the texts of comic books. cbrTekStraktor can however also be used for scanlation or similar purposes. The application also enables to manually define text areas in CBR files. The application comprises a simple graphical editor for further processing the extracted text. The text extraction is achieved by a combination of statistical and graphical processing operations. ...
