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Showing 5 open source projects for "3d visualization"

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1

ReViMS

ReViMS, a 3D volume rendering tool for light-sheet/confocal microscopy

Reconstruction and Visualization from Multiple Sections (ReViMS), an open-source, user-friendly software for automatically estimating volume and several other features of 3D multicellular aggregates (i.e., cancer spheroid, zebrafish, fruit fly). ReViMS requires a z-stack of 2D binary masks, obtained by segmenting a sequence of fluorescent images acquired by scanning the aggregate along the z axis, using a confocal or a light-sheet fluorescent microscope.

Downloads: 0 This Week

Last Update: 2025-10-28
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2

ReViSP

ReViSP, a 3D volume rendering MATLAB tool for multicellular spheroids

Reconstruction and Visualization from a Single Projection (ReViSP) tool: a 3D volume rendering method we developed to reconstruct the 3D shape of multicellular spheroids, besides estimating the volume by counting the voxels (3D pixels) fully included in the 3D surface. ReViSP is written in MATLAB (The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided.

Downloads: 4 This Week

Last Update: 2022-05-19
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3

Malimpa

Malimpa stands for MAtlab Library for IMage Processing and Analysis. It provides functions for 2D/3D grascale/color image creation, filtering, or measurement. It requires, and complements Matlab Image Processing Toolbox. Important notice: the project is now hosted in GitHub, https://github.com/dlegland/matImage

Downloads: 0 This Week

Last Update: 2013-06-28
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4

SmoothLife

A generalization of Conway's Game of Life

Conway's Game of Life is generalized to a continuous domain. OpenGL and GLSL shaders are used for real-time 2D and 3D graphics. Time stepping is done via a real to complex FFT based convolution operation. There are also two deliberately simple test implementations in FreeBasic and Matlab. A 2D version on a sphere shows that it is really not dependent on the underlying grid.

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Downloads: 9 This Week

Last Update: 2016-10-23
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5

im-browser

MIB is a high-performance software package for image segmentation

Microscopy Image Browser (MIB) is a high-performance software package for advanced image processing, segmentation and visualization of multi-dimensional (2D-4D) light and electron microscopy datasets. Home page: http://mib.helsinki.fi

Downloads: 0 This Week

Last Update: 2019-02-09
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