Search Results for "segmentation"
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Showing 52 open source projects for "segmentation"
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SimpleITK
A layer built on top of the Insight Toolkit (ITK)
SimpleITK is an image analysis toolkit with a large number of components supporting general filtering operations, image segmentation and registration. It is built on top of the Insight Segmentation and Registration Toolkit ITK with the intent of providing a simplified interface to ITK. SimpleITK itself is written in C++ but is available for a large number of programming languages. Wrapping of the C++ code is accomplished through SWIG, in principle, any language wrapped by SWIG should be applicable to SimpleITK. ... -
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Medical Img Segmentation Suite
A software providing easy ways to segment structures in medical images
- 15 segmentation tools (FloodFill Strict, Adaptive Gaussian Threshold, Manual Brush (Freehand Lasso), Polygon Lasso (Click Points), Manual Bounding Box, Auto Bounding Box, Local Otsu Auto-Threshold, K-Means Clustering, Watershed, GrabCut AI, Canny Edge + Morphological Close, Morphologic Active Contours, Interactive Heatmap, Topographical Relief Map, Segment Anything AI) - Hybrid Layout (1 window with editor tools or Split-View with a preview window) - Intelligent file management (once a folder is loaded, the system recognizes which files already have masks and leaves them in the background) - Real-time filter application (CLAHE, Global Histogram Equalization, Top-Hat, Bottom-Hat, Multi-Scale Retinex, Homomorphic Filter, Sharpness Control) - Three mask and label options (conventional masks in - Lesion shape, lesion region bounding boxes, and heatmap to outline the lesion and its secondary components) - Brush/cursor sensitivity control... -
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Lama Cleaner
Image inpainting tool powered by SOTA AI Model
...Windows 1-Click Installer, classical image inpainting algorithm powered by cv2. Multiple SOTA AI models, and various inpainting strategies. Run as a desktop application. Interactive Segmentation on any object. -
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IOPaint
Image inpainting tool powered by SOTA AI Model
IOPaint is a powerful open-source image editing tool focused on inpainting, outpainting, object removal, and general image manipulation driven by state-of-the-art AI models, delivering these capabilities through both local and hosted workflows. Designed to be fully self-hosted and flexible, IOPaint supports a variety of underlying generators and inpaint models — from LaMa erase networks to Stable Diffusion-based replace/object generation — giving users multiple ways to refine or reconstruct... -
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PersonaLive
Expressive Portrait Image Animation for Live Streaming
...It leverages deep generative models that condition on a static reference image and a driving input (such as motion or expression cues) to produce a seamless animated portrait sequence that can run indefinitely without segmentation artifacts. The framework prioritizes low-latency and streamable output, making it suitable for real-time creative workflows, broadcast overlays, or interactive avatars on consumer-grade GPUs. PersonaLive’s architecture balances visual quality and efficiency by combining motion encoding, temporal modules, and hybrid implicit control signals to preserve identity and stable expression through long sequences. -
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Habitat-Sim
A flexible, high-performance 3D simulator for Embodied AI research
Habitat-Sim is a high-performance 3D simulator for embodied AI research, designed to run photorealistic indoor environments at thousands of frames per second. It offers GPU-accelerated rendering and a flexible sensor suite—RGB, depth, semantic segmentation, and more—so agents can perceive and act in realistic scenes. The engine is written in C++ with Python bindings and integrates physics, navigation meshes, and shortest-path planners to support tasks like point-goal navigation, rearrangement, and interactive manipulation. It ships with connectors to popular datasets and scene formats, plus tools for dataset generation and scene replay. ... -
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ShinyCardinal
Mass spectrometry imaging data analysis software tool
ShinyCardinal is an open-source and vendor-neutral software that covers all steps in MSI data analysis. It leverages the R package Cardinal to enhance its functionalities by introducing several additional important features, such as the removal of background noises and matrix peaks, deisotoping, absolute quantification, network analysis, and metabolite identification. ShinyCardinal is built as a desktop application with a conveniently designed graphic user interface to provide users a... -
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Comic panel detection
Program, written in python, which detect panels in comics
Program, written in python, which detect panels in comics, based on Max Halford's tutorial "https://maxhalford.github.io/blog/comic-book-panel-segmentation/". It allows you to process Jpg/Png images in a folder , and then save the individual panels in a folder or in a single pdf file. Unfortunately it is far from perfect and makes many mistakes especially with "black and white" comics. -
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WingSegment
WingSegment: A tool for Analysis and Modeling of Insect Wings
WingSegment is a MATLAB app-designed tool employing a hybrid approach of computer vision and graph theory for precise insect wing image segmentation. WingSegment detects cells, junctions, Pterostigma, and venation patterns, measuring geometric features and generating Voronoi patterns. The tool utilizes region-growing, thinning, and Dijkstra's algorithms for boundary detection, junction identification, and vein path extraction. It provides histograms and box plots of geometric features, facilitating comprehensive wing analysis. ... -
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ProStack
ProStack - a platform for image processing and analysis
ProStack - a platform for image processing and analysis. It implements various image processing methods as separate modules, that can be joined in a complex image processing scenario by use of a graphical user interface. RPMs are available at https://build.opensuse.org/project/repositories/home:mackoel:compbio -
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GIMP ML
AI for GNU Image Manipulation Program
...It enables the use of recent advances in computer vision to the conventional image editing pipeline. Applications from deep learning such as monocular depth estimation, semantic segmentation, mask generative adversarial networks, image super-resolution, de-noising and coloring have been incorporated with GIMP through Python-based plugins. Additionally, operations on images such as edge detection and color clustering have also been added. GIMP-ML relies on standard Python packages such as numpy, scikit-image, pillow, pytorch, open-cv, scipy. ... -
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Batch PIE
A batch pipelined image editor
Current filter functionality: - Simple editing options: Image cropping, resizing, rotation, Color brightness curve alignment - Histobram processing: Convolution, statistics (e. g. f_max or median analysis) - Image segmentation: The actual segmentation process as well as group weight calculation for further filtering (both functions rely on self defined custom dynamic mathematical functions) - Dynamic mathematical functions for custom and automated image filtering: General mathematical operations, using image or matrix as f(x, y), export f(x, y) as image or matrix, mapping variables on other ones and of course boolean operation for case sensitivity - A flexible variables model of dynamic mathematical function that sets no restriction on particular variables count - Sub project support for an organized total process targeting to save time using previously created editing routines instead of redoing steps each time -
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cocolib / light field suite
CUDA library for continuous optimization and light field analysis
Library for continuous convex optimization in image analysis, together with a command line tool and Matlab interface. Implements several recent algorithms for inverse problems and image segmentation with total variation regularizers and vectorial multilabel transition costs. Also included is a suite for variational light field analysis, which ties into the HCI light field benchmark set and givens reference implementations for a number of our recently published algorithms. *** NOTE: documentation on the SourceForge page is outdated and not updated anymore, please visit http://cocolib.net *** -
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House3D
A Realistic and Rich 3D Environment
...Each environment includes fully labeled 3D objects, allowing agents to perceive and interact with their surroundings through multiple sensory modalities including RGB images, depth maps, semantic segmentation masks, and top-down maps. The simulator is optimized for high-performance rendering, achieving thousands of frames per second to enable efficient large-scale training of RL agents. House3D has served as the foundation for several influential research projects such as RoomNav (for concept-based navigation) and Embodied Question Answering (EQA). -
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Composight is a cross-platform toolkit for 3D-image processing in the domain of composite materials science. It is written in C++ and provides small, problem-specific applications for viewing, filtering and segmentation of volumetric data such as micro-CT scans. The main objective is not to provide yet another complex application for volume data visualization and medical image processing. Instead, Composight is a collection of small and simple apps that have already been successfully used to solve various problems in materials science.
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Scilab Image Processing Toolbox
Advanced image processing toolbox for Scilab on Unix/Linux/Mac OS
SIP is the image processing and computer vision package for SciLab, a free Matlab-like programming environment. SIP reads/writes images in formats like JPEG, PNG, and BMP. It does filtering, segmentation, edge detection, morphology, and shape analysis. Download from Git http://siptoolbox.sourceforge.net/devel -
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WrapImaJ
Multi-platform API for Image Processing systems in Life Sciences
WrapImaJ purposes to be a multi-platform wrapper for different Image Processing systems for: - using the Java programming language. The purpose of WrapImaJ is not to combine an exhaustive collection of all functionalities of different imaging system, but to offer a simple, concise Application Programming Interface (API) - allowing to develop imaging software, the source code of which is independent from the underlying imaging system on which it relies. In it's current form, it... -
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3DimViewer
3DimViewer is a lightweight 3D viewer of medical DICOM datasets.
3DimViewer is a lightweight 3D viewer of medical DICOM datasets that is distributed as open source software. The viewer is multiplatform software written in C++ that runs on Windows, Mac OS X and Linux systems. 3DimViewer source codes are available on Bitbucket (https://bitbucket.org/3dimlab/3dimviewer). Video tutorials can be found on YouTube (https://www.youtube.com/playlist?list=PLCvwUmKRw9ZO4YexLKEXmw_2jPo-kXVRn). -
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Gimias
Graphical Interface for Medical Image Analysis and Simulation
GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development. -
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BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.
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ITK-SNAP x64
ITK-SNAP static builds for Windows 64-bit(only one file)
...It is the product of a decade-long collaboration between Paul Yushkevich, Ph.D., of the Penn Image Computing and Science Laboratory (PICSL) at the University of Pennsylvania, and Guido Gerig, Ph.D., of the Scientific Computing and Imaging Institute (SCI) at the University of Utah, whose vision was to create a tool that would be dedicated to a specific function, segmentation, and would be easy to use and learn. ITK-SNAP is free, open-source, and multi-platform. -
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MatrixUser
A Multi-functional GUI-based Program for Image Processing and Analysis
The MatrixUser project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MatrixUser/ Most of the medical images (e.g. CT, MRI, PET, etc.) comprises multiple frames which represent slices, phases, timing etc. from the same imaging object. Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation. However, within Matlab, most of image manipulation functions are limited or... -
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ijTools
A set of plugins and tools for ImageJ (Image processing sofware)
A collection of plugins and tools for the ImageJ software. Contains modules for image filtering (directional filtering), segmentation, analysis (perimeter estimation, geodesic diameter...), or visualisation (image overlay). -
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serotonin
Serotonin is an easy to use image filters application.
...It is a fork/replacement of SBIP [https://code.google.com/p/sbip/] and licensed under GPL v3. === Filter Overview === * Binarizazion and Threshold image * Canny edge detection * Color segmentation * Congrap contour detection * Convolution (Laplace, Blurring) * Exponentiate color channels * Gaussian Blurring * Grayscale image * Image sketching * Invert image * Meanshift * Oil painting * Rotate color channels * Sepia image * Sobel edge detection * Split color space channels * Unsharp masking (USM) Program icon is lend out from Wikipedia (https://en.wikipedia.org/wiki/File:Serotonin-3D.png), thanks to Ben Mills for his great job in making illustrations of the Serotonin molecule. -
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Quant-CT
Micro-CT image stack segmentation and quantification
