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  • 1
    AAARF, written in PERL and with numerous adjustable parameters, identifies sequence overlaps in small shotgun sequence datasets and walks them out to create long pseudomolecules representing the most abundant repeats in a genome.
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  • 2

    deapheap

    Deap is a doubly heap for both min and max number access.

    ...It can be useful when both min and max are needed in the queue. It can also be used in situations where the number of items is too large and items with low priorities can be dropped with keep memory footprint small.
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  • 3

    PPSeq: Parallel NGS Analysis

    Parallel Processing for Next-Generation Sequencing (NGS) Analysis

    High-throughput next generation sequencing (NGS) technology has quickly emerged as a powerful tool in many aspects of biomedical research. However, along with its rapid development, the data magnitude and analysis complexity for NGS far exceed the capacity and capability of traditional small-scale computing facilities, such as multithreading algorithms on standalone workstations. To address this issue, here we present a solution using the ever-increasing supply of processing power by massive parallel processing (MPP) systems.
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  • 4
    small library to ease the task of calling callback functions
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