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Kalypso is an open source application for geospatial modelling and simulation. It is primarily developed to be a user friendly tool for GIS-based modelling and simulation of hydrological and hydraulic numerical models.
KalypsoBASE is a Desktop-GIS built on Eclipse. It's focus lies on modelling gis data using GML Application-Schemata. Features contain generic dialogs based on GML, maps based on OGC's SLD, and other tools like a charting framework or API for timeseries
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mesoFON is an individual-based mangrove forest model, a KiWi extension
...However, in principle, the number of species to be included programmatically is unlimited. (2) You can use a variety of growth functions via typing them in as a string on the GUI. (3) The model is transparent, sinc it comes with the Eclipse workbench of RePast.
Dados Observados is a application to share Climatological data.
Climatological data, especially precipitation and reservoirs volumes measurements, are fundamental input to decision support software to natural resources managers.
The nofdp IDSS is an open source application for modeling flood control measures and 1D hydrodynamic flood simulation. Additional modules for ecological and spatial analysis, multicriteria evaluation and communication are included.