CONMAP
Geobody connectivity analysis tool in geosciences. New version: 2.0
...Open a command prompt, go to the directory where you download CONMAP.jar and enter the command "java -jar CONMAP.jar <arguments>" (without quotation marks) to run the program.
Geobody detection itself runs pretty fast, with almost all execution time spent in file loading, parsing and saving.
New features in version 2.0:
geobody walk, vertical transitions count and mean thickness. See details running CONMAP without arguments.