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JAutodoc is an Eclipse Plugin for automatically adding Javadoc and file headers to your source code. It is possible to define Velocity templates for Javadoc and file headers.
Wiki: https://github.com/mkesting/jautodoc/wiki
Source Code: https://github.com/mkesting/jautodoc/
Update Site: https://dl.bintray.com/mkesting/jautodoc/update/latest/
Literate Eclipse Programming assists developers in writing structured, well documented source code. LEP integrates automated extraction of source code and documentation into a familiar eclipse environment. Compiling and debugging are fully supported.
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JS/UML is a plugin for the EclipseIDE that reverse-engineers JavaScript code to a UML model which can then be used to generate documentation and other artifacts.
Texlipse is a plugin that adds Latex editing support for the popular Eclipse Java IDE. Key features include: syntax highlight, command completion, bibliography completion, outline navigation and automatic building.
ProViz is a program visualization framework for Java. It is built as a plugin to the EclipseIDE. (We are getting close to publishing resources and making this project distributable. Stay tuned!) A video demo: http://www.youtube.com/watch?v=BsoK1n-OM
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DocBook sml maintains multilingual documentations, generates fully automated artifacts(html,pdf,xml,txt), uses DocBook XSL,Saxon,Xalan,FOP,Lynx, is driven by Ant,Yax, supports Computer Aided Translation and runs standalone or in an IDE like Eclipse.
The Docbook Plugin for Eclipse will allow generating documents within EclipseIDE environment to various file formats that docbook supports using docbook xsl. Possible future enhancements could include support for docbook dsssl and apache's FOP support.
BibTeXlipse is an Eclipse plugin for managing and analyse bibliography databases. Mainly for BibTeX databases, but will import and export many other bibliographic formats.
It's currently in planning phase.