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...As a result, you only have to remember one single master password or select the key file to unlock the whole database. And the databases are encrypted using the best and most secure encryption algorithms currently known, AES and Twofish. See our features page for details.
elementary database files for Java, B+ tree index files, ISAM
...Includes scalable database files w/ space recovery and variable record length, scalable B+Tree index files. Supports file backup and restore. Two package types: one with and one without strong file encryption using Twofish algorithm and state-of-the-art encryption technology.
Cumulus4j is an encryption plug-in for DataNucleus. Applications can thus use JDO or JPA to persist their data into every common database. Using the Bouncy Castle cryptography libs, it provides strong encryption via AES, TwoFish or other algorithms.