Search Results for "research database" - Page 4
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Showing 549 open source projects for "research database"
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Acacia
A generic biodiversity database management system
An interactive data entry, querying, and editing system based on a generic conceptual schema for taxonomic databases. It combines the automated use of scientific names and synonyms in a species checklist with online access to geographical data and common knowledge data (morphological descriptors, genomics, ecology, vernacular names, economic uses, structured notes and conservation status) about the species. All these data can be cross-indexed to a citation list. The design and standard... -
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LoXiM is an object oriented, semistructural DBMS with a modern query language - Stack Based Querty Language (SBQL). It is a research project for inventing, testing and implementing an efficient, modern DBMS developed at Warsaw University.
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STON
Translator of SBGN PD and AF maps into Neo4j graph database.
STON, Sbgn TO Neo4j, is a Java-based framework that imports and translates metabolic, signalling and gene regulatory pathways presented in SBGN (Systems Biology Graphical Notation, http://www.sbgn.org) Process Description (PD) and Activity Flow (AF) languages to a graph-oriented format compatible with Neo4j (http://neo4j.com/). STON1.2 allows also to link common processes between two different PD maps. This framework uses two sets of libraries: LibSBGN and Neo4j... -
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QAL
Query Abstraction Layer
Project has moved to: https://github.com/OptimalBPM/qal QAL is a collection of libraries for mining, transforming and writing data from and to a number of places. Sources and destinations include different SQL and NoSQL backends, file formats like .csv, XML and excel. Even untidy HTML web pages. It has a database abstraction layer that supports connectivity to Postgres, MySQL, DB2, Oracle, MS SQL server. JSON and MongoDB is coming. It uses XML/JSON formats(self-generated SQL... -
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GMOD is a set of interoperable open source software components for visualizing, annotating, and managing biological data. See http://gmod.org for more.
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xlsLib
C++/C library to construct Excel .xls files in code.
A multiplatform C++ library for dynamic generation of Excel .xls files containing multiple worksheets. Unlike .csv files, these can be directly opened by Excel and thus provide an excellent way to output large data sets that require further analysis. To see the latest changes, select "Files" and view the README text displayed at the bottom of that pane. IMPORTANT: Major changes are contained in the current SVN source. If you have time please try to use it or the... -
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lsn
Free social network.
Free social network written on C++. - Messaging - Catalogue - Trading. -
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Sikher
Sikher gives you access to the Sikh Scriptures in multiple languages
Sikher gives you access to the Sikh Scriptures in multiple languages. To this end, through the GurbaniDB project, we have made available the world's most accurate database of the Sikh Scriptures with 53 translations and 22 transliterations. We now have various open source projects hosted on GitHub here: https://github.com/sikher/ Three important projects include: Sikher for Mobile, Tablet & Desktop - https://github.com/sikher/sikher GurbaniDB -... -
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Semantic MediaWiki
Lets you store and query data within the wiki's pages.
Semantic MediaWiki is an extension to the MediaWiki software (powering Wikipedia), which extends the Wiki with ideas from the Semantic Web. We focus on usability and tight integration. See the web site for further details and GitHub at https://github.com/SemanticMediaWiki/SemanticMediaWiki/releases for the file releases! (since version 2.4.0). -
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ANTz
realtime 3D data visualization
ANTz development has MOVED to GITHUB!!!! https://github.com/openantz/antz/ or visit the homepage at http://openantz.com -
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NoSQLMap
Automated NoSQL database enumeration and web application exploitation
A security tool for detecting and exploiting vulnerabilities in NoSQL databases, similar to SQLMap for traditional databases. -
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This project has been moved to https://github.com/inikep/XWRT XWRT (XML-WRT) is a high-performance XML compressor (it also works with textual files). It transforms XML to more compressible form and uses zlib (default), LZMA, PPMd, or lpaq6 as back-end compressor. It is similar to XMill, but has many improvements.
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NBT is an open source Matlab toolbox for the computation and integration of neurophysiological biomarkers. NBT allows for easy implementation of new biomarkers, and incorporates an online wiki with extensive help and tutorials.
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Java Application Framework For All
JAFFA is a Rich Web 2.0 POJO based Event-Driven SOA framework
An Enterprise Focused Java Framework For Rapid Application Development. JAFFA is a Java web application development stack, build around Web 2.0 technologies (ExtJS, DWR, JAWR) with an extensive service architecture, meta-data layer and rules engine (based on JBoss AOP and Drools). It provides an event driven SOA infrastructure with advanced scheduling and queue sub-systems -
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OpenCryobank is an attempt to develop a simple, free and open database system for frozen samples inventory in biological laboratories. It is mainly aimed at semen and embryo cryobanks, but it can be used for any kind of biological sample. Visit us: http://reprobio.unileon.es/services/analisis-cromatina-espermatica/
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msci
Mad Science
A bunch of miscillaneous scientific simulation projects not important enough to have their own project. Includes Gaspard-Rice chaotic scattering simulation, sea ice emissivity modelling, IDL library and any others I create or find kicking around. -
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Tellervo
Dendrochronological sample measurement, curation and analysis program
Tellervo enables users to measure, curate and analyse dendrochronological samples. It has a server/client architecture enabling users to collaborate within and between laboratories. -
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The CFD General Notation System (CGNS) provides a standard for recording and recovering computer data associated with the numerical solution of fluid dynamics equations. WE HAVE MOVED! Very old (unsupported) stable releases can still be found here, but the new repository is at https://github.com/CGNS
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The goal of PyTables is to enable the end user to efficiently and easily manipulate large datasets (both homogenous, i.e. arrays, and heterogenous, i.e. tables) on a persistent, hierarchical way.
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Taxy is a tool for browsing and quering data organized as a taxonomy. Through the use of plugins it allows to connect to different data sources, such as the NCBI species taxonomy or the catalogue of biomedical services of the EU project ACGT.
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Open Information Integration Tool Suite (Open II) is used by analysts and programmers to accelerate data integration and harmonization across organizations. OpenII has a neutral schema repository for browsing and comparing all sorts of data models. OpenII is built as a Rich Client Platform Application on top of Eclipse 3.x. Developers need to download Eclipse, install the RCP support, the Fatjar plugin and the Delta Pack in one of the 3.x flavors. Release Notes Release Date: Jan...
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Postgres-XC is a write-scalable synchronous multi-master PostgreSQL cluster with the following features. 1) Both read and write scalability. 2) Configured with more than one server. 3) Complete global transaction and visibility management.
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Collective Mind Technology
plugin-based framework for systematic and reproducible experimentation
New version moved to http://github.com/ctuning/ck Collective Mind framework (cM) is an open-source plugin-based schema-free repository and infrastructure for collaborative, systematic and reproducible research and experimentation. This 3rd version (started in 2006) helps to implement, preserve, share and reproduce the whole experimental setup as connected modules and data. cM uses crowdsourcing to leverage knowledge and computational resources of multiple users. For example, it...
